Hmdb loader
Identification
HMDB Protein ID HMDBP14413
Secondary Accession Numbers None
Name Genome polyprotein
Synonyms Not Available
Gene Name Not Available
Protein Type Unknown
Biological Properties
General Function Not Available
Specific Function Plays a role in virus budding by binding to the cell membrane and gathering the viral RNA into a nucleocapsid that forms the core of a mature virus particle. During virus entry, may induce genome penetration into the host cytoplasm after hemifusion induced by the surface proteins. Can migrate to the cell nucleus where it modulates host functions. Overcomes the anti-viral effects of host EXOC1 by sequestering and degrading the latter through the proteasome degradation pathway (PubMed:23522008).Inhibits RNA silencing by interfering with host Dicer.Prevents premature fusion activity of envelope proteins in trans-Golgi by binding to envelope protein E at pH6.0. After virion release in extracellular space, gets dissociated from E dimers.Acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is the only viral peptide matured by host furin in the trans-Golgi network probably to avoid catastrophic activation of the viral fusion activity in acidic Golgi compartment prior to virion release. prM-E cleavage is inefficient, and many virions are only partially matured. These uncleaved prM would play a role in immune evasion.May play a role in virus budding. Exerts cytotoxic effects by activating a mitochondrial apoptotic pathway through M ectodomain. May display a viroporin activity.Binds to host cell surface receptor and mediates fusion between viral and cellular membranes (PubMed:19272179). Envelope protein is synthesized in the endoplasmic reticulum in the form of heterodimer with protein prM (By similarity). They play a role in virion budding in the ER, and the newly formed immature particle is covered with 60 spikes composed of heterodimer between precursor prM and envelope protein E (By similarity). The virion is transported to the Golgi apparatus where the low pH causes dissociation of PrM-E heterodimers and formation of E homodimers (By similarity). prM-E cleavage is inefficient, and many virions are only partially matured. These uncleaved prM would play a role in immune evasion (By similarity).Involved in immune evasion, pathogenesis and viral replication. Once cleaved off the polyprotein, is targeted to three destinations: the viral replication cycle, the plasma membrane and the extracellular compartment. Essential for viral replication. Required for formation of the replication complex and recruitment of other non-structural proteins to the ER-derived membrane structures. Excreted as a hexameric lipoparticle that plays a role against host immune response. Antagonizing the complement function. Binds to the host macrophages and dendritic cells. Inhibits signal transduction originating from Toll-like receptor 3 (TLR3).Disrupts the host endothelial glycocalyx layer of host pulmonary microvascular endothelial cells, inducing degradation of sialic acid and shedding of heparan sulfate proteoglycans. NS1 induces expression of sialidases, heparanase, and activates cathepsin L, which activates heparanase via enzymatic cleavage. These effects are probably linked to the endothelial hyperpermeability observed in severe dengue disease (By similarity). Mediates complement activation, which may contribute to the pathogenesis of the vascular leakage that occurs in severe dengue disease (PubMed:16544248).Component of the viral RNA replication complex that functions in virion assembly and antagonizes the host immune response.Required cofactor for the serine protease function of NS3. May have membrane-destabilizing activity and form viroporins (By similarity).Displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS2B, performs its autocleavage and cleaves the polyprotein at dibasic sites in the cytoplasm: C-prM, NS2A-NS2B, NS2B-NS3, NS3-NS4A, NS4A-2K and NS4B-NS5. NS3 RNA helicase binds RNA and unwinds dsRNA in the 3' to 5' direction.Regulates the ATPase activity of the NS3 helicase activity. NS4A allows NS3 helicase to conserve energy during unwinding. Plays a role in the inhibition of the host innate immune response. Interacts with host MAVS and thereby prevents the interaction between DDX58 and MAVS. In turn, IFN-beta production is impaired. Interacts with host AUP1 which mediates induction of lipophagy in host cells and facilitates production of virus progeny particles (By similarity).Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.Induces the formation of ER-derived membrane vesicles where the viral replication takes place. Inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway (PubMed:15956546).Replicates the viral (+) and (-) RNA genome, and performs the capping of genomes in the cytoplasm (By similarity). NS5 methylates viral RNA cap at guanine N-7 and ribose 2'-O positions (PubMed:19850911). Besides its role in RNA genome replication, also prevents the establishment of cellular antiviral state by blocking the interferon-alpha/beta (IFN-alpha/beta) signaling pathway (PubMed:15944325). Inhibits host TYK2 and STAT2 phosphorylation, thereby preventing activation of JAK-STAT signaling pathway (PubMed:19754307). May reduce immune responses by preventing the recruitment of the host PAF1 complex to interferon-responsive genes (PubMed:30550790).
Pathways Not Available
Reactions Not Available
GO Classification
Biological Process
fusion of virus membrane with host endosome membrane
virion attachment to host cell
protein oligomerization
suppression by virus of host TYK2 activity
suppression by virus of host STAT2 activity
suppression by virus of host MAVS activity
pore formation by virus in membrane of host cell
induction by virus of host autophagy
clathrin-dependent endocytosis of virus by host cell
suppression by virus of host type I interferon-mediated signaling pathway
suppression by virus of host transcription
viral RNA genome replication
Cellular Component
viral envelope
host cell endoplasmic reticulum membrane
host cell nucleus
virion membrane
host cell mitochondrion
host cell perinuclear region of cytoplasm
viral capsid
integral to membrane of host cell
extracellular region
integral to membrane
Molecular Function
exogenous protein binding
serine-type endopeptidase activity
ion channel activity
RNA-directed RNA polymerase activity
structural molecule activity
mRNA (nucleoside-2'-O-)-methyltransferase activity
mRNA (guanine-N7-)-methyltransferase activity
protein dimerization activity
nucleoside-triphosphatase activity
double-stranded RNA binding
RNA helicase activity
ATP binding
metal ion binding
Cellular Location Not Available
Gene Properties
Chromosome Location Not Available
Locus Not Available
SNPs Not Available
Gene Sequence Not Available
Protein Properties
Number of Residues Not Available
Molecular Weight 379543.79
Theoretical pI Not Available
Pfam Domain Function
Signals Not Available
Transmembrane Regions
  • 102-119;243-260;262-280;726-746;753-773;1196-1220;1227-1245;1270-1290;1292-1310;1318-1338;1347-1367;1371-1391;2148-2168;2193-2213;2229-2249;2348-2368;2414-2434;2460-2480;
Protein Sequence Not Available
GenBank ID Protein Not Available
UniProtKB/Swiss-Prot ID P29990
UniProtKB/Swiss-Prot Entry Name POLG_DEN26
PDB IDs
GenBank Gene ID Not Available
GeneCard ID Not Available
GenAtlas ID Not Available
HGNC ID Not Available
References
General References
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  2. Keelapang P, Sriburi R, Supasa S, Panyadee N, Songjaeng A, Jairungsri A, Puttikhunt C, Kasinrerk W, Malasit P, Sittisombut N: Alterations of pr-M cleavage and virus export in pr-M junction chimeric dengue viruses. J Virol. 2004 Mar;78(5):2367-81. [PubMed:14963133 ]
  3. Munoz-Jordan JL, Laurent-Rolle M, Ashour J, Martinez-Sobrido L, Ashok M, Lipkin WI, Garcia-Sastre A: Inhibition of alpha/beta interferon signaling by the NS4B protein of flaviviruses. J Virol. 2005 Jul;79(13):8004-13. [PubMed:15956546 ]
  4. Avirutnan P, Punyadee N, Noisakran S, Komoltri C, Thiemmeca S, Auethavornanan K, Jairungsri A, Kanlaya R, Tangthawornchaikul N, Puttikhunt C, Pattanakitsakul SN, Yenchitsomanus PT, Mongkolsapaya J, Kasinrerk W, Sittisombut N, Husmann M, Blettner M, Vasanawathana S, Bhakdi S, Malasit P: Vascular leakage in severe dengue virus infections: a potential role for the nonstructural viral protein NS1 and complement. J Infect Dis. 2006 Apr 15;193(8):1078-88. Epub 2006 Mar 9. [PubMed:16544248 ]
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  7. Shah PS, Link N, Jang GM, Sharp PP, Zhu T, Swaney DL, Johnson JR, Von Dollen J, Ramage HR, Satkamp L, Newton B, Huttenhain R, Petit MJ, Baum T, Everitt A, Laufman O, Tassetto M, Shales M, Stevenson E, Iglesias GN, Shokat L, Tripathi S, Balasubramaniam V, Webb LG, Aguirre S, Willsey AJ, Garcia-Sastre A, Pollard KS, Cherry S, Gamarnik AV, Marazzi I, Taunton J, Fernandez-Sesma A, Bellen HJ, Andino R, Krogan NJ: Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis. Cell. 2018 Dec 13;175(7):1931-1945.e18. doi: 10.1016/j.cell.2018.11.028. [PubMed:30550790 ]
  8. Lok SM, Kostyuchenko V, Nybakken GE, Holdaway HA, Battisti AJ, Sukupolvi-Petty S, Sedlak D, Fremont DH, Chipman PR, Roehrig JT, Diamond MS, Kuhn RJ, Rossmann MG: Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins. Nat Struct Mol Biol. 2008 Mar;15(3):312-7. doi: 10.1038/nsmb.1382. Epub 2008 Feb 10. [PubMed:18264114 ]
  9. Roehrig JT, Volpe KE, Squires J, Hunt AR, Davis BS, Chang GJ: Contribution of disulfide bridging to epitope expression of the dengue type 2 virus envelope glycoprotein. J Virol. 2004 Mar;78(5):2648-52. doi: 10.1128/jvi.78.5.2648-2652.2004. [PubMed:14963174 ]
  10. Uchil PD, Kumar AV, Satchidanandam V: Nuclear localization of flavivirus RNA synthesis in infected cells. J Virol. 2006 Jun;80(11):5451-64. doi: 10.1128/JVI.01982-05. [PubMed:16699025 ]
  11. Issur M, Geiss BJ, Bougie I, Picard-Jean F, Despins S, Mayette J, Hobdey SE, Bisaillon M: The flavivirus NS5 protein is a true RNA guanylyltransferase that catalyzes a two-step reaction to form the RNA cap structure. RNA. 2009 Dec;15(12):2340-50. doi: 10.1261/rna.1609709. Epub 2009 Oct 22. [PubMed:19850911 ]
  12. Bhuvanakantham R, Li J, Tan TT, Ng ML: Human Sec3 protein is a novel transcriptional and translational repressor of flavivirus. Cell Microbiol. 2010 Apr 1;12(4):453-72. doi: 10.1111/j.1462-5822.2009.01407.x. Epub 2009 Nov 4. [PubMed:19889084 ]
  13. Jones CT, Ma L, Burgner JW, Groesch TD, Post CB, Kuhn RJ: Flavivirus capsid is a dimeric alpha-helical protein. J Virol. 2003 Jun;77(12):7143-9. doi: 10.1128/jvi.77.12.7143-7149.2003. [PubMed:12768036 ]
  14. Wang SH, Syu WJ, Hu ST: Identification of the homotypic interaction domain of the core protein of dengue virus type 2. J Gen Virol. 2004 Aug;85(Pt 8):2307-2314. doi: 10.1099/vir.0.80067-0. [PubMed:15269372 ]
  15. Ho LJ, Hung LF, Weng CY, Wu WL, Chou P, Lin YL, Chang DM, Tai TY, Lai JH: Dengue virus type 2 antagonizes IFN-alpha but not IFN-gamma antiviral effect via down-regulating Tyk2-STAT signaling in the human dendritic cell. J Immunol. 2005 Jun 15;174(12):8163-72. doi: 10.4049/jimmunol.174.12.8163. [PubMed:15944325 ]
  16. Mazzon M, Jones M, Davidson A, Chain B, Jacobs M: Dengue virus NS5 inhibits interferon-alpha signaling by blocking signal transducer and activator of transcription 2 phosphorylation. J Infect Dis. 2009 Oct 15;200(8):1261-70. doi: 10.1086/605847. [PubMed:19754307 ]
  17. Suksanpaisan L, Susantad T, Smith DR: Characterization of dengue virus entry into HepG2 cells. J Biomed Sci. 2009 Feb 4;16:17. doi: 10.1186/1423-0127-16-17. [PubMed:19272179 ]
  18. Bhuvanakantham R, Ng ML: West Nile virus and dengue virus capsid protein negates the antiviral activity of human Sec3 protein through the proteasome pathway. Cell Microbiol. 2013 Oct;15(10):1688-706. doi: 10.1111/cmi.12143. Epub 2013 Apr 18. [PubMed:23522008 ]