Hmdb loader
Identification
HMDB Protein ID HMDBP07926
Secondary Accession Numbers
  • 13637
Name Protocadherin gamma-B5
Synonyms
  1. PCDH-gamma-B5
Gene Name PCDHGB5
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain
Pathways Not Available
Reactions Not Available
GO Classification
Component
cell part
membrane
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cellular process
cell adhesion
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Cell membrane
  2. Single-pass type I membrane protein
Gene Properties
Chromosome Location Chromosome:5
Locus 5q31
SNPs PCDHGB5
Gene Sequence
>2772 bp
ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTC
CTGCTGTCTTTGTTCTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAA
ATGCCCAAGGGCTCCGTAGTGGGGAACCTCGCCACGGACCTGGGGTTCAGCGTCCAGGAG
TTACCGACTCGAAAACTGCGCGTCAGTTCGGAGAAGCCTTACTTCACCGTGAGCGCAGAG
AGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGGAGATATGCGGGAAGAAGCCA
GCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTATCACGTGAAT
GTGGAGATCGAGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTG
CAAATAAGTGAGTCTGCACAGCCTGGCACAAGATTTATACTAGAAGTAGCAGAAGATGCA
GATATTGGCTTAAACTCTCTGCAGAAGTATAAACTCTCTCTTAACCCAAGTTTCTCATTA
ATAATTAAGGAGAAACAGGATGGTAGTAAATACCCGGAACTGGCACTGGAGAAAACCTTA
GACCGGGAACAACAGAGTTACCATCGTTTAGTCCTGACTGCCTTGGACGGTGGACATCCA
CCCCTAAGCGGCACCACTGAGCTCCGGATCCAGGTAACCGACGCCAATGATAATCCCCCG
GTATTCAACCGAGACGTGTACAGAGTCAGCCTTCGGGAAAACGTGCCACCAGGCACCACT
GTGTTGCAAGTGTCAGCCACTGACCAAGACGAGGGCATCAACTCAGAAATTACTTATTCC
TTCTACAGAACCGGGCAAATCTTTAGTCTGAATTCAAAGAGCGGAGAAATTACCACTCAA
AAGAAACTGGATTTTGAAGAGACCAAGGAATATTCAATGGTTGTAGAAGGGAGGGATGGT
GGTGGACTGGTTGCACAATGTACAGTTGAAATTAATATTCAAGATGAAAATGACAATAGC
CCAGAAGTTACATTCCATTCTCTACTTGAAATGATTCTGGAAAACGCGGTGCCTGGAACA
CTAATTGCTTTGATCAAAATACATGACCAAGATTCTGGGGAAAATGGGGAGGTTAATTGT
CAATTACAAGGCGAAGTCCCTTTTAAGATTATCTCTTCATCCAAAAATTCGTATAAGTTG
GTAACAGATGGAACCCTAGACCGAGAGCAAACCCCGGAGTACAATGTCACCATCACAGCC
ACAGACAGGGGCAAGCCGCCCCTCTCCTCCAGCATAAGCGTCATCCTACATATCAGAGAC
GTCAACGATAACGCTCCGGTTTTCCACCAGGCGTCCTACTTAGTCAGTGTACCCGAAAAC
AACCCTCCTGGGGCCTCCATCGCGCAAGTCTGCGCCTCGGACCTGGACTTGGGGTTGAAC
GGCCAAGTCTCCTACTCTATCATGGCCAGCGACCTAGAGCCTCTGGCACTGGCCTCTTAC
GTGTCCATGAGCGCGCAAAGTGGGGTGGTGTTCGCGCAGCGCGCCTTTGACTACGAGCAG
CTGCGCACCTTCGAACTCACACTACAGGCCCGCGACCAGGGCTCGCCTGCGCTCAGCGCA
AACGTGAGCCTGCGCGTGTTGGTGGGCGACCGAAACGACAACGCACCGCGGGTGCTGTAC
CCCGCGCTGGGTCCCGACGGCTCTGCGCTCTTCGATATGGTGCCGCGCGCTGCAGAGCCC
GGCTACCTGGTGACCAAGGTAGTGGCCGTGGACGCAGACTCAGGACACAACGCCTGGCTG
TCCTACCACGTGCTGCAGGCTAGCGAGCCCGGGCTCTTCAGCCTGGGGCTGCGCACAGGA
GAGGTGCGCACAGCGCGTGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGGTT
GCTGTGCGTGATGGTGGACAGCCGCCACTCTCCGCCACCGCCACGCTGCACTTGGTCTTT
GCTGACAGCTTGCAGGAGGTGCTGCCGGATATCACTGACCGCCCTGTACCCTCTGACCCC
CAGGCTGAGCTGCAGTTTTACCTAGTGGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTC
CTGGCCGTGATTCTGGCCGTTGCCTTGCGCCTGCGACGCTCCTCCAGCCCTGCCGCCTGG
AGCTGCTTCCAACCTGGTCTCTGTGTCAAGTCTGGACCTGTGGTTCCCCCCAACTACAGT
CAGGGGACTTTGCCTTATTCCTACAACCTATGTGTTGCACATACAGGAAAGACGGAGTTT
AATTTCCTAAAATGTAGTGAGCAATTGAGTTCAGGACAAGACATACTTTGTGGTGATTCA
TCTGGGGCCTTATTTCCACTTTGTAATTCCAGCGAGTCGACTTCCCATCCTGAGTTGCAA
GCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCC
CAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAA
GCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGT
GCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCC
GACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGC
AAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAG
GAGAAGAAGTAA
Protein Properties
Number of Residues 923
Molecular Weight 99874.1
Theoretical pI 4.67
Pfam Domain Function
Signals
  • 1-30
Transmembrane Regions
  • 688-708
Protein Sequence
>Protocadherin gamma-B5
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL
IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP
VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ
KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT
LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA
TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN
GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA
NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL
SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF
ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW
SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS
SGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG
KRDGKAPAGGNGNKKKSGKKEKK
GenBank ID Protein 5456968
UniProtKB/Swiss-Prot ID Q9Y5G0
UniProtKB/Swiss-Prot Entry Name PCDGH_HUMAN
PDB IDs Not Available
GenBank Gene ID AF152334
GeneCard ID PCDHGB5
GenAtlas ID PCDHGB5
HGNC ID HGNC:8712
References
General References
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 2004 Oct;14(10B):2121-7. [PubMed:15489334 ]
  2. Wu Q, Maniatis T: A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell. 1999 Jun 11;97(6):779-90. [PubMed:10380929 ]