Hmdb loader
Identification
HMDB Protein ID HMDBP07923
Secondary Accession Numbers
  • 13634
Name Protocadherin gamma-B2
Synonyms
  1. PCDH-gamma-B2
Gene Name PCDHGB2
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain
Pathways Not Available
Reactions Not Available
GO Classification
Component
cell part
membrane
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cellular process
cell adhesion
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Cell membrane
  2. Single-pass type I membrane protein
Gene Properties
Chromosome Location Chromosome:5
Locus 5q31
SNPs PCDHGB2
Gene Sequence
>2796 bp
ATGAAAGCGAGCTCAGGGAGGTGCGGGCTGGTGCGGTGGCTGCAGGTACTGTTGCCCTTC
CTGTTGTCTTTGTTCCCCGGGGCTCTCCCAGTCCAGATCCGCTATTCAATTCCAGAGGAG
CTGGCCAAAAACTCGGTCGTAGGAAACCTCGCCAAGGATCTGGGGCTCAGCGTCCGGGAC
TTGCCAGCCCGGAAGCTGCGGGTTAGCGCGGAGAAGGAATATTTCACAGTAAACCCAGAA
AGCGGAGACTTACTTGTGAGTGACAGAATAGACCGAGAACAGATATGCGGGAAGCAGCCT
CTGTGTGTTCTGGATTTCGATACTGTCGCTGAAAATCCACTAAATATTTTCTACATAGCA
GTAATTGTGCAGGATATAAATGATAATACCCCGCTATTCAAACAGACTAAGATTAATTTA
AAAATTGGCGAATCCACTAAGCCAGGTACAACATTTCCACTTGACCCAGCCCTGGATTCA
GATGTTGGTCCTAACTCACTACAAAGATACCACCTTAATGACAACGAGTACTTTGATCTC
GCTGAGAAACAGACTCCAGATGGTCGTAAATATCCTGAGTTGATTCTAAAACACTCTCTG
GACAGAGAAGAGCACAGTTTACATCAATTGGTCCTCACAGCTGTGGATGGCGGAGACCCA
CCTCAAAGTGGCACGACCCAAATCCGAATCAAAGTCACGGATGCCAACGATAACCCTCCA
GTGTTCAGCCAGGACGTGTACAGGGTCACCCTGAGGGAGGACGTGCCGCCGGGCTTCTTT
GTGCTTCAAGTGACAGCCACCGACCGGGATGAAGGCATAAACGCAGAGATCACCTACTCC
TTTCATAATGTGGACGAACAAGTGAAACACTTTTTCAACTTAAATGAAAAAACAGGAGAA
ATCACGACAAAGGATGATTTGGATTTTGAGATTGCAAGTAGTTACACTCTGAGTATCGAA
GCAAAAGATCCTGGAGATCTAGCAGCCCACTGCAGTATCCAAGTTGAAATTCTTGATGAC
AACGATTGTGCACCTGAAGTTATTGTGACTTCAGTATCTACTCCCCTACCGGAGGATTCG
CCACCAGGAACAGTGATCGCCTTGATAAAAACGAGAGACAGAGACTCTGGAGAAAATGGA
GAAGTTTACTGCCAAGTGTTGGGAAATGCCAAGTTTATTTTGAAATCTTCCTCAAAGAAC
TATTACAAACTAGTGACAGACGGCGCTCTGGACCGGGAGGAGATCCCAGAATACAATCTC
ACCATCACAGCCACCGACGGGGGCAAGCCGCCCCTCTCCTCCAGCATAATTGTCACCCTG
CACATCTCCGACGTCAACGATAATGCCCCAGTTTTCCAACAGACTTCCTACATGGTTCAC
GTGGCAGAGAACAATCCTCCTGGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGAC
TTGGGCCCCAGTGGCCAAGTTTCCTACTCCATCGTAGCGAGCGACCTGAAGCCGCGGGAG
ATTTTATCCTACGTGTCCGTGAGCGCGCAGAGCGGGGTGGTGTTCGCGCAGCGCGCCTTC
GATCATGAGCAGCTGCGCGCCTTCGAGCTCACACTGCAGGCCCGCGACCAGGGCTCGCCC
GCGCTCAGCGCCAACGTGAGCCTGCGCGTGTTAGTGGGCGACCTCAATGACAATGCGCCA
CGGGTGCTGTACCCCGCGCTGGGGCCTGATGGCTCCGCCCTCTTCGATATGGTGCCACGC
GCCGCAGAGCCCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGCAGACTCAGGACAC
AACGCTTGGCTGTCCTACCACGTGCTGCAGGCCAGCGAGCCCGGGCTCTTCAGCCTGGGG
TTGCGCACGGGTGAGGTGCGCACAGCGCGTGCCTTGGGCGACAGGGACGCGGCCCGCCAG
CGCCTGCTGGTCGCTGTGCGTGATGGAGGACAGCCGCCACTCTCCGCTACGGCCACGCTG
CACCTAATCTTCGCGGATAGCCTGCAAGAGGTATTGCCAGACCTCAGCGACCGCCGGGAG
CCCTCTGACCCCCAGGCAAAACTGCAGTTTTACCTGGTTGTGGCCTTGGCCTTGATCTCA
GTGCTCTTCTTCCTCGCGGTGATTCTGGCAATCTCCCTGCGCCTGCGACTCTCTTCCAGG
TCAGATGCTTGGGACTGTTTTCAGCCTGGTCTCAGCTCCAAGCCTGGACCTGGGGTTCTC
CCCAATTACAGTGAGGGTACATTGCCCTATTCCTACAACCTGTGTGTTGCCTCACAATCA
GCCAAGACAGAGTTCAATTTTCTGAACATAACCCCGGAATTGGTTCCCGCGCAAGATCTC
GTCTGTGACAATGCCTCTTGGGAACAAAATACAAATCATGGAGCCGCTGGGGTCCCTTTT
GCCTCAGATACTATTTTGAAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCC
CAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAAC
CAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGAT
GGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCC
CAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAAT
GCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGC
AACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA
Protein Properties
Number of Residues 931
Molecular Weight 100874.1
Theoretical pI 4.66
Pfam Domain Function
Signals
  • 1-30
Transmembrane Regions
  • 692-712
Protein Sequence
>Protocadherin gamma-B2
MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD
LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA
VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL
AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP
VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE
ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS
PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL
TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD
LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP
ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR
SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL
VCDNASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
GenBank ID Protein 5456959
UniProtKB/Swiss-Prot ID Q9Y5G2
UniProtKB/Swiss-Prot Entry Name PCDGE_HUMAN
PDB IDs Not Available
GenBank Gene ID AF152331
GeneCard ID PCDHGB2
GenAtlas ID PCDHGB2
HGNC ID HGNC:8709
References
General References
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 2004 Oct;14(10B):2121-7. [PubMed:15489334 ]
  2. Wu Q, Maniatis T: A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell. 1999 Jun 11;97(6):779-90. [PubMed:10380929 ]