Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-08-27 01:12:24 UTC
Update Date2022-09-22 18:34:34 UTC
HMDB IDHMDB0242137
Secondary Accession NumbersNone
Metabolite Identification
Common Name(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione
Description(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, also known as cyclo(prolylglycyl), 17O- and 15N-labeled or cyclo(pro-gly), belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof. Based on a literature review very few articles have been published on (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione.
Structure
Thumb
Synonyms
ValueSource
Cyclo(prolylglycyl), 17O- and 15N-labeledHMDB
Cyclo(pro-O-gly)HMDB
Cyclo(pro-gly)HMDB
Cyclo(prolyl-glycyl)HMDB
Cyclo-(pro-gly)HMDB
Cyclo-prolylglycineHMDB
CycloprolylglycineHMDB
Cyclo(gly-O-pro)HMDB
Cyclo(gly-pro)HMDB
Cyclo(glycylprolyl)HMDB
Cyclo(prolylglycyl)HMDB
Cyclo(glycylprolyl), (L)-isomerHMDB
Cyclo(glycyl-L-prolyl)HMDB
Chemical FormulaC7H10N2O2
Average Molecular Weight154.1665
Monoisotopic Molecular Weight154.074227574
IUPAC Name(8aS)-octahydropyrrolo[1,2-a]piperazine-1,4-dione
Traditional Name(8aS)-hexahydropyrrolo[1,2-a]piperazine-1,4-dione
CAS Registry NumberNot Available
SMILES
O=C1CNC(=O)[C@@H]2CCCN12
InChI Identifier
InChI=1S/C7H10N2O2/c10-6-4-8-7(11)5-2-1-3-9(5)6/h5H,1-4H2,(H,8,11)/t5-/m0/s1
InChI KeyOWOHLURDBZHNGG-YFKPBYRVSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid or derivatives
  • Dioxopiperazine
  • 2,5-dioxopiperazine
  • N-alkylpiperazine
  • 1,4-diazinane
  • Piperazine
  • Pyrrolidine
  • Tertiary carboxylic acid amide
  • Carboxamide group
  • Lactam
  • Secondary carboxylic acid amide
  • Azacycle
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organic oxygen compound
  • Carbonyl group
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-1.6ALOGPS
logP-1.4ChemAxon
logS0.11ALOGPS
pKa (Strongest Acidic)11.35ChemAxon
pKa (Strongest Basic)-4.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area49.41 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity37.79 m³·mol⁻¹ChemAxon
Polarizability15.12 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-166.77230932474
DeepCCS[M+Na]+142.18330932474
AllCCS[M+H]+131.632859911
AllCCS[M+H-H2O]+127.032859911
AllCCS[M+NH4]+135.932859911
AllCCS[M+Na]+137.232859911
AllCCS[M-H]-129.332859911
AllCCS[M+Na-2H]-130.232859911
AllCCS[M+HCOO]-131.232859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.2.06 minutes32390414
Predicted by Siyang on May 30, 20229.0051 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.72 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1113.0 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid288.7 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid97.4 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid173.8 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid72.7 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid232.0 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid319.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)418.1 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid659.0 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid164.4 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid909.1 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid196.1 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid227.0 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate471.7 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA308.1 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water139.5 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dioneO=C1CNC(=O)[C@@H]2CCCN122650.0Standard polar33892256
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dioneO=C1CNC(=O)[C@@H]2CCCN121308.3Standard non polar33892256
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dioneO=C1CNC(=O)[C@@H]2CCCN121771.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione,1TMS,isomer #1C[Si](C)(C)N1CC(=O)N2CCC[C@H]2C1=O1690.2Semi standard non polar33892256
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione,1TMS,isomer #1C[Si](C)(C)N1CC(=O)N2CCC[C@H]2C1=O1646.7Standard non polar33892256
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione,1TMS,isomer #1C[Si](C)(C)N1CC(=O)N2CCC[C@H]2C1=O2453.5Standard polar33892256
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1CC(=O)N2CCC[C@H]2C1=O1950.7Semi standard non polar33892256
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1CC(=O)N2CCC[C@H]2C1=O1935.6Standard non polar33892256
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1CC(=O)N2CCC[C@H]2C1=O2657.1Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione GC-MS (Non-derivatized) - 70eV, Positivesplash10-004i-9400000000-71a4c134589c616209a92021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Positive-QTOFsplash10-0a4i-0900000000-4bcafb51a4771ba53a352021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Positive-QTOFsplash10-0a4i-1900000000-01d9fcd2909c5db0f24a2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Positive-QTOFsplash10-0a4i-1900000000-960260ac9b61daf622b62021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Positive-QTOFsplash10-0a4i-0900000000-76f927e7cc599035c0aa2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 50V, Positive-QTOFsplash10-0002-0900000000-ebbbc504a0c8b516ebd52021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 30V, Positive-QTOFsplash10-0002-9400000000-b583ceeb14e83bb85c5d2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 30V, Positive-QTOFsplash10-0a4i-3900000000-f842a34087a3fb2059c82021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 50V, Positive-QTOFsplash10-004i-9000000000-3ec5bb9c9db69d35abca2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 30V, Positive-QTOFsplash10-00di-9000000000-17e4f6ea56ba777dbbf32021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Positive-QTOFsplash10-0a4i-0900000000-2c49ff14e47cb122fa8f2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Positive-QTOFsplash10-0a4i-0900000000-0eabc91a5fdf51914e732021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Positive-QTOFsplash10-0a4i-0900000000-ff0f354d0495dbb486242016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 20V, Positive-QTOFsplash10-0a4i-1900000000-4a5302029faef6bdb2c62016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 40V, Positive-QTOFsplash10-006x-9000000000-865e8b098bc7111f5db82016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Negative-QTOFsplash10-0udi-2900000000-437c010e2c5b80bb4a422016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 20V, Negative-QTOFsplash10-0udl-9500000000-05338d84da56af99f7592016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 40V, Negative-QTOFsplash10-0gbc-9000000000-969b67a26d712b6e8ef22016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Positive-QTOFsplash10-0a4i-0900000000-a88018c8bb2fc754b6152021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 20V, Positive-QTOFsplash10-0ab9-7900000000-5536909a75162e2059c42021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 40V, Positive-QTOFsplash10-00di-9000000000-a717ab0d5df61dc6844a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 10V, Negative-QTOFsplash10-0udi-0900000000-e02e71c66ee7cff07ec02021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 20V, Negative-QTOFsplash10-0udi-4900000000-6e3033002877228e612a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione 40V, Negative-QTOFsplash10-0006-9200000000-8cb046900d9e253111302021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
UrineDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB04541
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID112149
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound126154
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Kong SW, Hernandez-Ferrer C: Assessment of coverage for endogenous metabolites and exogenous chemical compounds using an untargeted metabolomics platform. Pac Symp Biocomput. 2020;25:587-598. [PubMed:31797630 ]