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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2017-09-09 08:57:17 UTC

Update Date

2022-11-30 19:26:42 UTC

HMDB ID

HMDB0116660

Secondary Accession Numbers

None

Metabolite Identification

Common Name

PG(i-12:0/i-12:0)

Description

PG(i-12:0/i-12:0) is a phosphatidylglycerol - a glycerophospholipid in which a phosphoglycerol moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PG(i-12:0/i-12:0), in particular, consists of one chain of isododecanoic acid at the C-1 position and one chain of isododecanoic acid at the C-2 position. Phosphatidylglycerol is present at a level of 1-2% in most animal tissues, but it can be the second most abundant phospholipid in lung surfactant (up to 11% of the total). It is well established that the concentration of phosphatidylglycerol increases during fetal development. Phosphatidylglycerol may be present in animal tissues merely as a precursor for cardiolipin synthesis.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

PG(i-12:0/i-12:0)
  Mrv1652309181707342D          

 43 42  0  0  1  0            999 V2000
   14.0374  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3624  -24.5493    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.6871  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7126  -24.5493    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0120  -24.5493    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8354  -25.3289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.3878  -24.1595    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   14.9979  -23.4844    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.7775  -24.8347    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0628  -23.7697    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7379  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4131  -23.7697    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   18.0883  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9501  -25.3586    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.7261  -23.7330    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.9894  -23.0847    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.8011  -23.0847    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.2975  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2975  -23.3654    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5834  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8693  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1551  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4410  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7268  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0127  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2985  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5844  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8703  -24.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1561  -24.1369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1561  -24.9619    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1210  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1210  -26.5128    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4069  -25.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6928  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.9796  -25.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9796  -24.9164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  2 14  1  1  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  5  3  1  0  0  0  0
  5 18  1  0  0  0  0
  7  4  1  0  0  0  0
  8  7  2  0  0  0  0
  9  7  1  0  0  0  0
 10  7  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 12 16  1  6  0  0  0
 12 17  1  0  0  0  0
 13 12  1  0  0  0  0
 13 15  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
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 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
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 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
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 28 30  1  0  0  0  0
 31  6  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 41 43  1  0  0  0  0
M  END

HMDB0116660
     RDKit          3D
PG(i-12:0/i-12:0)
100 99  0  0  0  0  0  0  0  0999 V2000
   -7.8240   -3.8459    1.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0598   -3.3803    0.5320 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2739   -4.1560    0.9670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3100   -1.9097    0.7323 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.4098    1.3520    0.0713 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0350    1.5291   -1.3271 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3954    0.4237   -2.0533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1379   -0.0569   -1.3866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1474    1.0722   -1.3310 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9201    0.5566   -0.6752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7319    0.4835    0.5569 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8810    0.1130   -1.4668 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7054   -0.3788   -0.9157 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0644    0.5763   -0.0580 C   0  0  2  0  0  0  0  0  0  0  0  0
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    3.5387    4.0489   -0.7327 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.2209    5.2018   -0.8662 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1034    6.2615   -1.0978 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3633    8.9419    0.6866 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.6615    0.3803    2.5173 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6478   -1.3654    1.2501 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1908   -0.1839    0.5374 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1697   -0.3626   -0.5388 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5322   -0.8732   -0.2923 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.8787   -5.6989    1.7603 C   0  0  0  0  0  0  0  0  0  0  0  0
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 41100  1  0
M  END

PG(i-12:0/i-12:0)
  Mrv1652309181707342D          

 43 42  0  0  1  0            999 V2000
   14.0374  -24.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  9  7  1  0  0  0  0
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 31  6  1  0  0  0  0
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 41 42  1  0  0  0  0
 41 43  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0116660

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCC(C)C)OC(=O)CCCCCCCCC(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C30H59O10P/c1-25(2)17-13-9-5-7-11-15-19-29(33)37-23-28(24-39-41(35,36)38-22-27(32)21-31)40-30(34)20-16-12-8-6-10-14-18-26(3)4/h25-28,31-32H,5-24H2,1-4H3,(H,35,36)/t27-,28+/m0/s1

> <INCHI_KEY>
UJHLPGHQDFRRBW-WUFINQPMSA-N

> <FORMULA>
C30H59O10P

> <MOLECULAR_WEIGHT>
610.766

> <EXACT_MASS>
610.384585098

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
100

> <JCHEM_AVERAGE_POLARIZABILITY>
69.99862053647837

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2R)-2,3-bis[(10-methylundecanoyl)oxy]propoxy][(2S)-2,3-dihydroxypropoxy]phosphinic acid

> <ALOGPS_LOGP>
4.89

> <JCHEM_LOGP>
7.0654030620000015

> <ALOGPS_LOGS>
-5.92

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.641245576372423

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8907737771908404

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9689647678483633

> <JCHEM_POLAR_SURFACE_AREA>
148.82000000000002

> <JCHEM_REFRACTIVITY>
158.39610000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
30

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.41e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2,3-bis[(10-methylundecanoyl)oxy]propoxy((2S)-2,3-dihydroxypropoxy)phosphinic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0116660
     RDKit          3D
PG(i-12:0/i-12:0)
100 99  0  0  0  0  0  0  0  0999 V2000
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  7 56  1  0
  8 57  1  0
  8 58  1  0
  9 59  1  0
  9 60  1  0
 10 61  1  0
 10 62  1  0
 11 63  1  0
 11 64  1  0
 15 65  1  0
 15 66  1  0
 16 67  1  1
 17 68  1  0
 17 69  1  0
 21 70  1  0
 23 71  1  0
 23 72  1  0
 24 73  1  6
 25 74  1  0
 26 75  1  0
 26 76  1  0
 27 77  1  0
 31 78  1  0
 31 79  1  0
 32 80  1  0
 32 81  1  0
 33 82  1  0
 33 83  1  0
 34 84  1  0
 34 85  1  0
 35 86  1  0
 35 87  1  0
 36 88  1  0
 36 89  1  0
 37 90  1  0
 37 91  1  0
 38 92  1  0
 38 93  1  0
 39 94  1  0
 40 95  1  0
 40 96  1  0
 40 97  1  0
 41 98  1  0
 41 99  1  0
 41100  1  0
M  END

HEADER    PROTEIN                                 18-SEP-17   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PG(i-12:0/i-12:0)                                 
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-SEP-17         0                                  
HETATM    1  C   UNK     0      26.203 -45.098   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      24.943 -45.825   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      23.683 -45.098   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      27.464 -45.825   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      22.422 -45.825   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      23.959 -47.281   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      28.724 -45.098   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      27.996 -43.837   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      29.451 -46.358   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      29.984 -44.370   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      31.244 -45.098   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      32.504 -44.370   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      33.765 -45.098   0.000  0.00  0.00           C+0
HETATM   14  H   UNK     0      26.040 -47.336   0.000  0.00  0.00           H+0
HETATM   15  O   UNK     0      34.955 -44.302   0.000  0.00  0.00           O+0
HETATM   16  H   UNK     0      33.580 -43.091   0.000  0.00  0.00           H+0
HETATM   17  O   UNK     0      31.362 -43.091   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      21.089 -45.055   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      21.089 -43.615   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      19.756 -45.827   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      18.423 -45.055   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      17.090 -45.827   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      15.756 -45.055   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      14.423 -45.827   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      13.090 -45.055   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      11.757 -45.827   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      10.424 -45.055   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       9.091 -45.827   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.758 -45.055   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       7.758 -46.596   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      22.626 -48.051   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      22.626 -49.491   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      21.293 -47.279   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      19.960 -48.051   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      18.627 -47.279   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      17.294 -48.051   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      15.961 -47.279   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      14.628 -48.051   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      13.295 -47.279   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      11.961 -48.051   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      10.628 -47.279   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       9.295 -48.051   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       9.295 -46.511   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6   14    3                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   18                                                       
CONECT    6    2   31                                                       
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   16   17   13                                             
CONECT   13   12   15                                                       
CONECT   14    2                                                            
CONECT   15   13                                                            
CONECT   16   12                                                            
CONECT   17   12                                                            
CONECT   18    5   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31    6   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   84    0
END

COMPND    HMDB0116660
HETATM    1  C1  UNL     1      -7.824  -3.846   1.274  1.00  0.00           C  
HETATM    2  C2  UNL     1      -9.060  -3.380   0.532  1.00  0.00           C  
HETATM    3  C3  UNL     1     -10.274  -4.156   0.967  1.00  0.00           C  
HETATM    4  C4  UNL     1      -9.310  -1.910   0.732  1.00  0.00           C  
HETATM    5  C5  UNL     1      -8.110  -1.087   0.217  1.00  0.00           C  
HETATM    6  C6  UNL     1      -8.410   0.350   0.441  1.00  0.00           C  
HETATM    7  C7  UNL     1      -7.410   1.352   0.071  1.00  0.00           C  
HETATM    8  C8  UNL     1      -7.035   1.529  -1.327  1.00  0.00           C  
HETATM    9  C9  UNL     1      -6.395   0.424  -2.053  1.00  0.00           C  
HETATM   10  C10 UNL     1      -5.138  -0.057  -1.387  1.00  0.00           C  
HETATM   11  C11 UNL     1      -4.147   1.072  -1.331  1.00  0.00           C  
HETATM   12  C12 UNL     1      -2.920   0.557  -0.675  1.00  0.00           C  
HETATM   13  O1  UNL     1      -2.732   0.483   0.557  1.00  0.00           O  
HETATM   14  O2  UNL     1      -1.881   0.113  -1.467  1.00  0.00           O  
HETATM   15  C13 UNL     1      -0.705  -0.379  -0.916  1.00  0.00           C  
HETATM   16  C14 UNL     1       0.064   0.576  -0.058  1.00  0.00           C  
HETATM   17  C15 UNL     1       0.650   1.722  -0.906  1.00  0.00           C  
HETATM   18  O3  UNL     1       1.463   2.524  -0.120  1.00  0.00           O  
HETATM   19  P1  UNL     1       2.089   3.769  -1.061  1.00  0.00           P  
HETATM   20  O4  UNL     1       3.539   4.049  -0.733  1.00  0.00           O  
HETATM   21  O5  UNL     1       1.950   3.313  -2.702  1.00  0.00           O  
HETATM   22  O6  UNL     1       1.221   5.202  -0.866  1.00  0.00           O  
HETATM   23  C16 UNL     1       2.103   6.261  -1.098  1.00  0.00           C  
HETATM   24  C17 UNL     1       1.411   7.599  -0.946  1.00  0.00           C  
HETATM   25  O7  UNL     1       0.370   7.730  -1.833  1.00  0.00           O  
HETATM   26  C18 UNL     1       0.950   7.703   0.505  1.00  0.00           C  
HETATM   27  O8  UNL     1       0.363   8.942   0.687  1.00  0.00           O  
HETATM   28  O9  UNL     1       1.203  -0.122   0.412  1.00  0.00           O  
HETATM   29  C19 UNL     1       1.505  -0.219   1.758  1.00  0.00           C  
HETATM   30  O10 UNL     1       0.661   0.380   2.517  1.00  0.00           O  
HETATM   31  C20 UNL     1       2.662  -0.926   2.340  1.00  0.00           C  
HETATM   32  C21 UNL     1       3.648  -1.365   1.250  1.00  0.00           C  
HETATM   33  C22 UNL     1       4.191  -0.184   0.537  1.00  0.00           C  
HETATM   34  C23 UNL     1       5.170  -0.363  -0.539  1.00  0.00           C  
HETATM   35  C24 UNL     1       6.532  -0.873  -0.292  1.00  0.00           C  
HETATM   36  C25 UNL     1       6.673  -2.203   0.328  1.00  0.00           C  
HETATM   37  C26 UNL     1       8.183  -2.598   0.398  1.00  0.00           C  
HETATM   38  C27 UNL     1       8.281  -3.961   1.048  1.00  0.00           C  
HETATM   39  C28 UNL     1       9.749  -4.345   1.113  1.00  0.00           C  
HETATM   40  C29 UNL     1       9.879  -5.699   1.760  1.00  0.00           C  
HETATM   41  C30 UNL     1      10.245  -4.398  -0.341  1.00  0.00           C  
HETATM   42  H1  UNL     1      -7.763  -3.448   2.305  1.00  0.00           H  
HETATM   43  H2  UNL     1      -7.941  -4.961   1.373  1.00  0.00           H  
HETATM   44  H3  UNL     1      -6.901  -3.681   0.688  1.00  0.00           H  
HETATM   45  H4  UNL     1      -8.865  -3.618  -0.552  1.00  0.00           H  
HETATM   46  H5  UNL     1     -10.062  -4.756   1.892  1.00  0.00           H  
HETATM   47  H6  UNL     1     -10.608  -4.859   0.152  1.00  0.00           H  
HETATM   48  H7  UNL     1     -11.105  -3.449   1.160  1.00  0.00           H  
HETATM   49  H8  UNL     1      -9.475  -1.689   1.790  1.00  0.00           H  
HETATM   50  H9  UNL     1     -10.201  -1.615   0.154  1.00  0.00           H  
HETATM   51  H10 UNL     1      -7.233  -1.348   0.874  1.00  0.00           H  
HETATM   52  H11 UNL     1      -7.903  -1.346  -0.801  1.00  0.00           H  
HETATM   53  H12 UNL     1      -8.718   0.495   1.529  1.00  0.00           H  
HETATM   54  H13 UNL     1      -9.386   0.569  -0.101  1.00  0.00           H  
HETATM   55  H14 UNL     1      -6.451   1.216   0.713  1.00  0.00           H  
HETATM   56  H15 UNL     1      -7.776   2.350   0.528  1.00  0.00           H  
HETATM   57  H16 UNL     1      -7.953   1.860  -1.959  1.00  0.00           H  
HETATM   58  H17 UNL     1      -6.384   2.468  -1.380  1.00  0.00           H  
HETATM   59  H18 UNL     1      -5.988   0.932  -3.054  1.00  0.00           H  
HETATM   60  H19 UNL     1      -6.994  -0.399  -2.416  1.00  0.00           H  
HETATM   61  H20 UNL     1      -5.382  -0.437  -0.367  1.00  0.00           H  
HETATM   62  H21 UNL     1      -4.701  -0.945  -1.911  1.00  0.00           H  
HETATM   63  H22 UNL     1      -4.545   1.966  -0.810  1.00  0.00           H  
HETATM   64  H23 UNL     1      -3.910   1.362  -2.378  1.00  0.00           H  
HETATM   65  H24 UNL     1      -0.940  -1.275  -0.307  1.00  0.00           H  
HETATM   66  H25 UNL     1      -0.036  -0.708  -1.734  1.00  0.00           H  
HETATM   67  H26 UNL     1      -0.459   0.963   0.814  1.00  0.00           H  
HETATM   68  H27 UNL     1      -0.160   2.286  -1.419  1.00  0.00           H  
HETATM   69  H28 UNL     1       1.289   1.309  -1.712  1.00  0.00           H  
HETATM   70  H29 UNL     1       2.066   4.167  -3.221  1.00  0.00           H  
HETATM   71  H30 UNL     1       2.433   6.181  -2.152  1.00  0.00           H  
HETATM   72  H31 UNL     1       2.993   6.186  -0.460  1.00  0.00           H  
HETATM   73  H32 UNL     1       2.160   8.394  -1.094  1.00  0.00           H  
HETATM   74  H33 UNL     1       0.421   8.616  -2.271  1.00  0.00           H  
HETATM   75  H34 UNL     1       0.237   6.855   0.662  1.00  0.00           H  
HETATM   76  H35 UNL     1       1.871   7.599   1.128  1.00  0.00           H  
HETATM   77  H36 UNL     1      -0.484   8.940   0.143  1.00  0.00           H  
HETATM   78  H37 UNL     1       3.209  -0.310   3.086  1.00  0.00           H  
HETATM   79  H38 UNL     1       2.283  -1.847   2.819  1.00  0.00           H  
HETATM   80  H39 UNL     1       4.319  -2.124   1.606  1.00  0.00           H  
HETATM   81  H40 UNL     1       2.983  -1.932   0.493  1.00  0.00           H  
HETATM   82  H41 UNL     1       3.350   0.449   0.100  1.00  0.00           H  
HETATM   83  H42 UNL     1       4.628   0.554   1.303  1.00  0.00           H  
HETATM   84  H43 UNL     1       4.681  -1.016  -1.355  1.00  0.00           H  
HETATM   85  H44 UNL     1       5.224   0.633  -1.106  1.00  0.00           H  
HETATM   86  H45 UNL     1       7.107  -0.915  -1.281  1.00  0.00           H  
HETATM   87  H46 UNL     1       7.089  -0.081   0.317  1.00  0.00           H  
HETATM   88  H47 UNL     1       6.437  -2.190   1.441  1.00  0.00           H  
HETATM   89  H48 UNL     1       6.182  -2.993  -0.224  1.00  0.00           H  
HETATM   90  H49 UNL     1       8.716  -1.849   1.022  1.00  0.00           H  
HETATM   91  H50 UNL     1       8.541  -2.624  -0.632  1.00  0.00           H  
HETATM   92  H51 UNL     1       7.801  -3.995   2.027  1.00  0.00           H  
HETATM   93  H52 UNL     1       7.796  -4.710   0.396  1.00  0.00           H  
HETATM   94  H53 UNL     1      10.288  -3.544   1.636  1.00  0.00           H  
HETATM   95  H54 UNL     1       9.868  -6.487   0.983  1.00  0.00           H  
HETATM   96  H55 UNL     1      10.868  -5.703   2.286  1.00  0.00           H  
HETATM   97  H56 UNL     1       9.102  -5.858   2.525  1.00  0.00           H  
HETATM   98  H57 UNL     1      10.527  -3.377  -0.626  1.00  0.00           H  
HETATM   99  H58 UNL     1      11.077  -5.128  -0.428  1.00  0.00           H  
HETATM  100  H59 UNL     1       9.376  -4.714  -0.984  1.00  0.00           H  
CONECT    1    2   42   43   44
CONECT    2    3    4   45
CONECT    3   46   47   48
CONECT    4    5   49   50
CONECT    5    6   51   52
CONECT    6    7   53   54
CONECT    7    8   55   56
CONECT    8    9   57   58
CONECT    9   10   59   60
CONECT   10   11   61   62
CONECT   11   12   63   64
CONECT   12   13   13   14
CONECT   14   15
CONECT   15   16   65   66
CONECT   16   17   28   67
CONECT   17   18   68   69
CONECT   18   19
CONECT   19   20   20   21   22
CONECT   21   70
CONECT   22   23
CONECT   23   24   71   72
CONECT   24   25   26   73
CONECT   25   74
CONECT   26   27   75   76
CONECT   27   77
CONECT   28   29
CONECT   29   30   30   31
CONECT   31   32   78   79
CONECT   32   33   80   81
CONECT   33   34   82   83
CONECT   34   35   84   85
CONECT   35   36   86   87
CONECT   36   37   88   89
CONECT   37   38   90   91
CONECT   38   39   92   93
CONECT   39   40   41   94
CONECT   40   95   96   97
CONECT   41   98   99  100
END

HMDB0116660
     RDKit          3D
PG(i-12:0/i-12:0)
100 99  0  0  0  0  0  0  0  0999 V2000
   -7.8240   -3.8459    1.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0598   -3.3803    0.5320 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2739   -4.1560    0.9670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3100   -1.9097    0.7323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1101   -1.0867    0.2168 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4103    0.3498    0.4410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4098    1.3520    0.0713 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0350    1.5291   -1.3271 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3954    0.4237   -2.0533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1379   -0.0569   -1.3866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1474    1.0722   -1.3310 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9201    0.5566   -0.6752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7319    0.4835    0.5569 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8810    0.1130   -1.4668 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7054   -0.3788   -0.9157 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0644    0.5763   -0.0580 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6503    1.7220   -0.9055 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4626    2.5245   -0.1203 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0892    3.7689   -1.0608 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.5387    4.0489   -0.7327 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9500    3.3130   -2.7022 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2209    5.2018   -0.8662 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1034    6.2615   -1.0978 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4114    7.5988   -0.9464 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3703    7.7300   -1.8326 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9497    7.7026    0.5045 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3633    8.9419    0.6866 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2035   -0.1224    0.4119 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5049   -0.2190    1.7580 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6615    0.3803    2.5173 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6621   -0.9257    2.3404 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6478   -1.3654    1.2501 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1908   -0.1839    0.5374 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1697   -0.3626   -0.5388 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5322   -0.8732   -0.2923 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6731   -2.2026    0.3278 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1825   -2.5977    0.3979 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2807   -3.9608    1.0480 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7486   -4.3453    1.1126 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8787   -5.6989    1.7603 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2452   -4.3978   -0.3406 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7629   -3.4480    2.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9415   -4.9613    1.3733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9011   -3.6808    0.6880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8647   -3.6183   -0.5519 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0624   -4.7557    1.8920 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6077   -4.8593    0.1519 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1049   -3.4492    1.1599 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4747   -1.6893    1.7896 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2008   -1.6148    0.1537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2326   -1.3480    0.8737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9025   -1.3456   -0.8015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7182    0.4945    1.5294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3860    0.5695   -0.1014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4506    1.2155    0.7134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7762    2.3496    0.5281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9533    1.8597   -1.9588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3843    2.4685   -1.3800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9883    0.9324   -3.0543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9938   -0.3989   -2.4161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3820   -0.4374   -0.3675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7013   -0.9446   -1.9115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5453    1.9655   -0.8100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9099    1.3624   -2.3777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9396   -1.2749   -0.3067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0359   -0.7077   -1.7345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4588    0.9635    0.8140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1601    2.2858   -1.4194 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2890    1.3088   -1.7123 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0656    4.1672   -3.2212 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4331    6.1809   -2.1518 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9928    6.1858   -0.4599 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1601    8.3940   -1.0941 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4208    8.6161   -2.2708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2368    6.8547    0.6615 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8706    7.5990    1.1276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4837    8.9400    0.1431 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2090   -0.3100    3.0863 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2830   -1.8472    2.8188 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3190   -2.1236    1.6062 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9834   -1.9316    0.4934 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3501    0.4494    0.0997 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6278    0.5544    1.3029 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6809   -1.0161   -1.3553 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2239    0.6329   -1.1065 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1072   -0.9146   -1.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0893   -0.0809    0.3173 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4367   -2.1903    1.4408 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1817   -2.9932   -0.2244 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7156   -1.8490    1.0217 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5406   -2.6244   -0.6316 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8007   -3.9948    2.0273 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7964   -4.7096    0.3960 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2878   -3.5437    1.6359 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8680   -6.4874    0.9830 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.8679   -5.7034    2.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1021   -5.8582    2.5247 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5269   -3.3774   -0.6263 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0768   -5.1283   -0.4276 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3762   -4.7139   -0.9843 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
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 41100  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
1-Isododecanoyl-2-isododecanoyl-sn-glycero-3-phospho-(1'-glycerol)	HMDB
1-Isododecanoyl-2-isododecanoyl-sn-glycero-3-phosphoglycerol	HMDB
PG(24:0)	HMDB
Phosphatidylglycerol(i-12:0/i-12:0)	HMDB
Phosphatidylglycerol(24:0)	HMDB
1,2-Diisododecanoyl-rac-glycero-3-phosphoglycerol	HMDB
1,2-Diisododecanoyl-rac-glycero-3-phospho-(1'-glycerol)	HMDB
GPG(I-12:0/I-12:0)	HMDB
GPG(24:0)	HMDB
[(2R)-2,3-Bis[(10-methylundecanoyl)oxy]propoxy][(2S)-2,3-dihydroxypropoxy]phosphinate	HMDB
PG(i-12:0/i-12:0)	SMPDB

Chemical Formula

C₃₀H₅₉O₁₀P

Average Molecular Weight

610.766

Monoisotopic Molecular Weight

610.384585098

IUPAC Name

[(2R)-2,3-bis[(10-methylundecanoyl)oxy]propoxy][(2S)-2,3-dihydroxypropoxy]phosphinic acid

Traditional Name

(2R)-2,3-bis[(10-methylundecanoyl)oxy]propoxy((2S)-2,3-dihydroxypropoxy)phosphinic acid

CAS Registry Number

Not Available

SMILES

[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCC(C)C)OC(=O)CCCCCCCCC(C)C

InChI Identifier

InChI=1S/C30H59O10P/c1-25(2)17-13-9-5-7-11-15-19-29(33)37-23-28(24-39-41(35,36)38-22-27(32)21-31)40-30(34)20-16-12-8-6-10-14-18-26(3)4/h25-28,31-32H,5-24H2,1-4H3,(H,35,36)/t27-,28+/m0/s1

InChI Key

UJHLPGHQDFRRBW-WUFINQPMSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phosphatidylglycerols. These are glycerophosphoglycerols in which two fatty acids are bonded to the 1-glycerol moiety through ester linkages. As is the case with diacylglycerols, phosphatidylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphoglycerols

Direct Parent

Phosphatidylglycerols

Alternative Parents

Substituents

1,2-diacylglycerophosphoglycerol
Fatty acid ester
Dialkyl phosphate
Dicarboxylic acid or derivatives
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
1,2-diol
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Organic oxide
Organooxygen compound
Alcohol
Organic oxygen compound
Primary alcohol
Carbonyl group
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.89	ALOGPS
logP	7.07	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	1.89	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	148.82 Å²	ChemAxon
Rotatable Bond Count	30	ChemAxon
Refractivity	158.4 m³·mol⁻¹	ChemAxon
Polarizability	70 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	242.775	31661259
DarkChem	[M-H]-	236.781	31661259
DeepCCS	[M+H]+	248.474	30932474
DeepCCS	[M-H]-	246.133	30932474
DeepCCS	[M-2H]-	279.374	30932474
DeepCCS	[M+Na]+	254.387	30932474
AllCCS	[M+H]+	253.3	32859911
AllCCS	[M+H-H2O]+	252.7	32859911
AllCCS	[M+NH4]+	253.8	32859911
AllCCS	[M+Na]+	254.0	32859911
AllCCS	[M-H]-	232.4	32859911
AllCCS	[M+Na-2H]-	236.9	32859911
AllCCS	[M+HCOO]-	241.9	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	10.55 minutes	32390414
Predicted by Siyang on May 30, 2022	20.2083 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	2.3 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3941.3 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	220.2 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	256.4 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	170.2 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	614.6 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	1152.9 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	1024.5 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	112.9 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1891.0 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	854.7 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	2172.0 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	753.7 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	545.8 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	201.2 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	275.6 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	13.0 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
PG(i-12:0/i-12:0)	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCC(C)C)OC(=O)CCCCCCCCC(C)C	4081.7	Standard polar	33892256
PG(i-12:0/i-12:0)	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCC(C)C)OC(=O)CCCCCCCCC(C)C	3661.0	Standard non polar	33892256
PG(i-12:0/i-12:0)	[H][C@](O)(CO)COP(O)(=O)OC[C@@]([H])(COC(=O)CCCCCCCCC(C)C)OC(=O)CCCCCCCCC(C)C	4076.0	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
PG(i-12:0/i-12:0),1TMS,isomer #1	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](CO)O[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	4096.7	Semi standard non polar	33892256
PG(i-12:0/i-12:0),1TMS,isomer #2	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](O)CO[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	4075.1	Semi standard non polar	33892256
PG(i-12:0/i-12:0),1TMS,isomer #3	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](O)CO)O[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	4078.3	Semi standard non polar	33892256
PG(i-12:0/i-12:0),2TMS,isomer #1	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	4084.3	Semi standard non polar	33892256
PG(i-12:0/i-12:0),2TMS,isomer #2	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	4087.3	Semi standard non polar	33892256
PG(i-12:0/i-12:0),2TMS,isomer #3	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](O)CO[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	4070.4	Semi standard non polar	33892256
PG(i-12:0/i-12:0),3TMS,isomer #1	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	4069.5	Semi standard non polar	33892256
PG(i-12:0/i-12:0),3TMS,isomer #1	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	3643.2	Standard non polar	33892256
PG(i-12:0/i-12:0),3TMS,isomer #1	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)OC(=O)CCCCCCCCC(C)C	4453.3	Standard polar	33892256
PG(i-12:0/i-12:0),1TBDMS,isomer #1	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](CO)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC(C)C	4323.6	Semi standard non polar	33892256
PG(i-12:0/i-12:0),1TBDMS,isomer #2	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](O)CO[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC(C)C	4315.3	Semi standard non polar	33892256
PG(i-12:0/i-12:0),1TBDMS,isomer #3	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](O)CO)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC(C)C	4312.5	Semi standard non polar	33892256
PG(i-12:0/i-12:0),2TBDMS,isomer #1	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC(C)C	4547.8	Semi standard non polar	33892256
PG(i-12:0/i-12:0),2TBDMS,isomer #2	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@H](CO)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC(C)C	4538.2	Semi standard non polar	33892256
PG(i-12:0/i-12:0),2TBDMS,isomer #3	CC(C)CCCCCCCCC(=O)OC[C@H](COP(=O)(OC[C@@H](O)CO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCC(C)C	4535.2	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (1 TMS) - 70eV, Positive	splash10-001i-8840896000-46110fd73e4053521a82	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TBDMS_1_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TBDMS_2_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS (TBDMS_2_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - PG(i-12:0/i-12:0) GC-MS ("PG(i-12:0/i-12:0),1TMS,#1" TMS) - 70eV, Positive	Not Available	2021-10-20	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 10V, Positive-QTOF	splash10-03dl-4532963000-b69daf882bde2099734d	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 20V, Positive-QTOF	splash10-06u6-9742740000-6fda9d4aa31d62c90194	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 40V, Positive-QTOF	splash10-0a4i-9350620000-6f88dad7a3807c72c773	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 10V, Negative-QTOF	splash10-0a5a-0900322000-21bbe50745e99731ff18	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 20V, Negative-QTOF	splash10-002b-4901110000-95f2f33a0ef349d3f124	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 40V, Negative-QTOF	splash10-004i-9201000000-9ef27b272f5cf0eb8553	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 10V, Negative-QTOF	splash10-0a4i-0000009000-a98a43eda3ed6646c906	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 20V, Negative-QTOF	splash10-0a4j-0901207000-95e959dc402255dfb283	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - PG(i-12:0/i-12:0) 40V, Negative-QTOF	splash10-0a4j-0901206000-013e846fbd4880e862d5	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Name	SMPDB/PathBank	KEGG
Cardiolipin Biosynthesis CL(i-12:0/i-12:0/18:2(9Z,11Z)/18:2(9Z,11Z))		Not Available
Cardiolipin Biosynthesis CL(i-12:0/i-12:0/18:2(9Z,11Z)/a-13:0)		Not Available
Cardiolipin Biosynthesis CL(i-12:0/i-12:0/18:2(9Z,11Z)/a-15:0)		Not Available
Cardiolipin Biosynthesis CL(i-12:0/i-12:0/18:2(9Z,11Z)/a-17:0)		Not Available
Cardiolipin Biosynthesis CL(i-12:0/i-12:0/18:2(9Z,11Z)/a-21:0)		Not Available

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

74878372

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131823293

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. [PubMed:7834746 ]
Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for PG(i-12:0/i-12:0) (HMDB0116660)

MOL for HMDB0116660 (PG(i-12:0/i-12:0))

3D MOL for HMDB0116660 (PG(i-12:0/i-12:0))

3D SDF for HMDB0116660 (PG(i-12:0/i-12:0))

3D-SDF for HMDB0116660 (PG(i-12:0/i-12:0))

PDB for HMDB0116660 (PG(i-12:0/i-12:0))

3D PDB for HMDB0116660 (PG(i-12:0/i-12:0))

SMILES for HMDB0116660 (PG(i-12:0/i-12:0))

INCHI for HMDB0116660 (PG(i-12:0/i-12:0))

Structure for HMDB0116660 (PG(i-12:0/i-12:0))

3D Structure for HMDB0116660 (PG(i-12:0/i-12:0))

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra