| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2017-09-09 04:45:39 UTC |
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| Update Date | 2022-11-30 19:26:12 UTC |
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| HMDB ID | HMDB0115456 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | PA(24:1(15Z)/14:1(9Z)) |
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| Description | PA(24:1(15Z)/14:1(9Z)) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(24:1(15Z)/14:1(9Z)), in particular, consists of one chain of nervonic acid at the C-1 position and one chain of myristoleic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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| Structure | [H][C@@](COC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCCCC\C=C/CCCC InChI=1S/C41H77O8P/c1-3-5-7-9-11-13-15-16-17-18-19-20-21-22-23-24-26-27-29-31-33-35-40(42)47-37-39(38-48-50(44,45)46)49-41(43)36-34-32-30-28-25-14-12-10-8-6-4-2/h10,12,16-17,39H,3-9,11,13-15,18-38H2,1-2H3,(H2,44,45,46)/b12-10-,17-16-/t39-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1-Nervonoyl-2-myristoleoyl-sn-glycero-3-phosphate | HMDB | | 1-Nervonoyl-2-myristoleoyl-sn-phosphatidic acid | HMDB | | PA(24:1/14:1) | HMDB | | PA(24:1N9/14:1N5) | HMDB | | PA(24:1W9/14:1W5) | HMDB | | PA(38:2) | HMDB | | Phosphatidic acid(24:1(15Z)/14:1(9Z)) | HMDB | | Phosphatidic acid(24:1/14:1) | HMDB | | Phosphatidic acid(24:1n9/14:1n5) | HMDB | | Phosphatidic acid(24:1W9/14:1W5) | HMDB | | Phosphatidic acid(38:2) | HMDB | | Phosphatidate(24:1(15Z)/14:1(9Z)) | HMDB | | Phosphatidate(24:1/14:1) | HMDB | | Phosphatidate(24:1N9/14:1N5) | HMDB | | Phosphatidate(24:1W9/14:1W5) | HMDB | | Phosphatidate(38:2) | HMDB | | [(2R)-3-[(15Z)-Tetracos-15-enoyloxy]-2-[(9Z)-tetradec-9-enoyloxy]propoxy]phosphonate | HMDB | | 1-nervonoyl-2-myristoleoyl-sn-glycero-3-phosphate | SMPDB, HMDB | | 1-nervonoyl-2-myristoleoyl-sn-phosphatidic acid | SMPDB, HMDB | | PA(24:1/14:1) | SMPDB, HMDB | | PA(24:1n9/14:1n5) | SMPDB, HMDB | | PA(24:1w9/14:1w5) | SMPDB, HMDB | | PA(38:2) | SMPDB, HMDB | | Phosphatidic acid(24:1(15Z)/14:1(9Z)) | SMPDB, HMDB | | Phosphatidic acid(24:1/14:1) | SMPDB, HMDB | | Phosphatidic acid(24:1n9/14:1n5) | SMPDB, HMDB | | Phosphatidic acid(24:1w9/14:1w5) | SMPDB, HMDB | | Phosphatidic acid(38:2) | SMPDB, HMDB | | Phosphatidate(24:1(15Z)/14:1(9Z)) | SMPDB, HMDB | | Phosphatidate(24:1/14:1) | SMPDB, HMDB | | Phosphatidate(24:1n9/14:1n5) | SMPDB, HMDB | | Phosphatidate(24:1w9/14:1w5) | SMPDB, HMDB | | PA(24:1(15Z)/14:1(9Z)) | SMPDB |
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| Chemical Formula | C41H77O8P |
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| Average Molecular Weight | 729.033 |
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| Monoisotopic Molecular Weight | 728.535606437 |
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| IUPAC Name | [(2R)-3-[(15Z)-tetracos-15-enoyloxy]-2-[(9Z)-tetradec-9-enoyloxy]propoxy]phosphonic acid |
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| Traditional Name | (2R)-3-[(15Z)-tetracos-15-enoyloxy]-2-[(9Z)-tetradec-9-enoyloxy]propoxyphosphonic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@@](COC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCCCC\C=C/CCCC |
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| InChI Identifier | InChI=1S/C41H77O8P/c1-3-5-7-9-11-13-15-16-17-18-19-20-21-22-23-24-26-27-29-31-33-35-40(42)47-37-39(38-48-50(44,45)46)49-41(43)36-34-32-30-28-25-14-12-10-8-6-4-2/h10,12,16-17,39H,3-9,11,13-15,18-38H2,1-2H3,(H2,44,45,46)/b12-10-,17-16-/t39-/m1/s1 |
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| InChI Key | LFWHFMFBURQZGA-ZDMXYWDMSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Glycerophospholipids |
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| Sub Class | Glycerophosphates |
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| Direct Parent | 1,2-diacylglycerol-3-phosphates |
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| Alternative Parents | |
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| Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/24:1(15Z)) (PathBank: SMP0023868)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/18:2(9Z,12Z)) (PathBank: SMP0023869)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/18:3(6Z,9Z,12Z)) (PathBank: SMP0023870)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0023871)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/22:2(13Z,16Z)) (PathBank: SMP0023872)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0023873)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0023874)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/18:3(9Z,12Z,15Z)) (PathBank: SMP0023875)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0023876)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0023877)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0023878)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0023879)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0023880)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/20:2(11Z,14Z)) (PathBank: SMP0037069)
- De Novo Triacylglycerol Biosynthesis TG(24:1(15Z)/14:1(9Z)/20:3(8Z,11Z,14Z)) (PathBank: SMP0037070)
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 8.85 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 36.4116 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.01 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5295.6 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 584.2 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 373.3 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 261.8 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1104.7 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1842.2 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1375.5 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 258.4 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 3711.0 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1150.1 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 2899.3 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1392.7 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 745.7 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 646.6 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 870.1 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 10.1 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| PA(24:1(15Z)/14:1(9Z)),1TMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5151.6 | Semi standard non polar | 33892256 | | PA(24:1(15Z)/14:1(9Z)),1TMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 4522.0 | Standard non polar | 33892256 | | PA(24:1(15Z)/14:1(9Z)),1TMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5838.3 | Standard polar | 33892256 | | PA(24:1(15Z)/14:1(9Z)),2TMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 5072.8 | Semi standard non polar | 33892256 | | PA(24:1(15Z)/14:1(9Z)),2TMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 4497.9 | Standard non polar | 33892256 | | PA(24:1(15Z)/14:1(9Z)),2TMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 5059.9 | Standard polar | 33892256 | | PA(24:1(15Z)/14:1(9Z)),1TBDMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5387.2 | Semi standard non polar | 33892256 | | PA(24:1(15Z)/14:1(9Z)),1TBDMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 4612.9 | Standard non polar | 33892256 | | PA(24:1(15Z)/14:1(9Z)),1TBDMS,isomer #1 | CCCC/C=C\CCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 5822.9 | Standard polar | 33892256 |
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