Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-09-09 02:37:44 UTC
Update Date2022-11-30 19:25:53 UTC
HMDB IDHMDB0114758
Secondary Accession NumbersNone
Metabolite Identification
Common NameLysoPA(20:2(11Z,14Z)/0:0)
DescriptionLysoPA(20:2(11Z,14Z)/0:0) is a lysophosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. Lysophosphatidic acids can have different combinations of fatty acids of varying lengths and saturation attached at the C-1 (sn-1) or C-2 (sn-2) position. Fatty acids containing 16 and 18 carbons are the most common. LysoPA(20:2(11Z,14Z)/0:0), in particular, consists of one chain of eicosadienoic acid at the C-1 position. Lysophosphatidic acid is the simplest possible glycerophospholipid. It is the biosynthetic precursor of phosphatidic acid. Although it is present at very low levels only in animal tissues, it is extremely important biologically, influencing many biochemical processes.
Structure
Data?1563873518
Synonyms
ValueSource
1-Eicosadienoyl-glycero-3-phosphateHMDB
1-Eicosadienoyl-lysophosphatidic acidHMDB
LPA(20:2)HMDB
LPA(20:2(11Z,14Z))HMDB
LPA(20:2n6/0:0)HMDB
LPA(20:2W6/0:0)HMDB
LPA(20:2n6)HMDB
LPA(20:2W6)HMDB
Lysophosphatidic acid(20:2(11Z,14Z)/0:0)HMDB
Lysophosphatidic acid(20:2)HMDB
Lysophosphatidic acid(20:2(11Z,14Z))HMDB
Lysophosphatidic acid(20:2n6/0:0)HMDB
Lysophosphatidic acid(20:2W6/0:0)HMDB
Lysophosphatidic acid(20:2n6)HMDB
Lysophosphatidic acid(20:2W6)HMDB
LPA(20:2(11Z,14Z)/0:0)HMDB
LPA(20:2/0:0)HMDB
Lysophosphatidic acid(20:2/0:0)HMDB
1-(11Z,14Z-Eicosadienoyl)-phosphatidic acidHMDB
1-(11Z,14Z-Eicosadienoyl)-glycero-3-phosphateHMDB
1-eicosadienoyl-glycero-3-phosphate SMPDB, HMDB
1-eicosadienoyl-lysophosphatidic acid SMPDB, HMDB
LPA(20:2) SMPDB, HMDB
LPA(20:2(11Z,14Z)) SMPDB, HMDB
LPA(20:2n6/0:0) SMPDB, HMDB
LPA(20:2w6/0:0) SMPDB, HMDB
LPA(20:2n6) SMPDB, HMDB
LPA(20:2w6) SMPDB, HMDB
Lysophosphatidic acid(20:2(11Z,14Z)/0:0) SMPDB, HMDB
Lysophosphatidic acid(20:2) SMPDB, HMDB
Lysophosphatidic acid(20:2(11Z,14Z)) SMPDB, HMDB
Lysophosphatidic acid(20:2n6/0:0) SMPDB, HMDB
Lysophosphatidic acid(20:2w6/0:0) SMPDB, HMDB
Lysophosphatidic acid(20:2n6) SMPDB, HMDB
Chemical FormulaC23H43O7P
Average Molecular Weight462.564
Monoisotopic Molecular Weight462.274640723
IUPAC Name{2-hydroxy-3-[(11Z,14Z)-icosa-11,14-dienoyloxy]propoxy}phosphonic acid
Traditional Name2-hydroxy-3-[(11Z,14Z)-icosa-11,14-dienoyloxy]propoxyphosphonic acid
CAS Registry NumberNot Available
SMILES
CCCCC\C=C/C\C=C/CCCCCCCCCC(=O)OCC(O)COP(O)(O)=O
InChI Identifier
InChI=1S/C23H43O7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-23(25)29-20-22(24)21-30-31(26,27)28/h6-7,9-10,22,24H,2-5,8,11-21H2,1H3,(H2,26,27,28)/b7-6-,10-9-
InChI KeyPIWSAHYRIXOITD-HZJYTTRNSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1-acylglycerol-3-phosphates. These are lysophosphatidic acids where the glycerol is esterified with a fatty acid at O-1 position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphates
Direct Parent1-acylglycerol-3-phosphates
Alternative Parents
Substituents
  • 1-acylglycerol-3-phosphate
  • Fatty acid ester
  • Monoalkyl phosphate
  • Fatty acyl
  • Alkyl phosphate
  • Phosphoric acid ester
  • Organic phosphoric acid derivative
  • Carboxylic acid ester
  • Secondary alcohol
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Carbonyl group
  • Alcohol
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Naturally occurring process
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP5.42ALOGPS
logP6.01ChemAxon
logS-5.6ALOGPS
pKa (Strongest Acidic)1.51ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area113.29 ŲChemAxon
Rotatable Bond Count22ChemAxon
Refractivity125.62 m³·mol⁻¹ChemAxon
Polarizability52.74 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+221.67131661259
DarkChem[M-H]-216.87731661259
DeepCCS[M+H]+212.36530932474
DeepCCS[M-H]-209.50130932474
DeepCCS[M-2H]-244.48530932474
DeepCCS[M+Na]+220.77530932474
AllCCS[M+H]+218.032859911
AllCCS[M+H-H2O]+216.232859911
AllCCS[M+NH4]+219.732859911
AllCCS[M+Na]+220.232859911
AllCCS[M-H]-213.132859911
AllCCS[M+Na-2H]-216.432859911
AllCCS[M+HCOO]-220.132859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.10.19 minutes32390414
Predicted by Siyang on May 30, 202216.9304 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.54 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3016.6 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid218.4 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid211.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid184.2 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid575.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid843.3 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid693.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)368.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1692.8 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid678.2 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1483.7 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid639.1 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid444.9 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate317.4 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA316.4 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.3 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
LysoPA(20:2(11Z,14Z)/0:0)CCCCC\C=C/C\C=C/CCCCCCCCCC(=O)OCC(O)COP(O)(O)=O3703.5Standard polar33892256
LysoPA(20:2(11Z,14Z)/0:0)CCCCC\C=C/C\C=C/CCCCCCCCCC(=O)OCC(O)COP(O)(O)=O2969.3Standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0)CCCCC\C=C/C\C=C/CCCCCCCCCC(=O)OCC(O)COP(O)(O)=O3407.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
LysoPA(20:2(11Z,14Z)/0:0),1TMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O)O)O[Si](C)(C)C3520.0Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),1TMS,isomer #2CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(O)COP(=O)(O)O[Si](C)(C)C3480.8Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C3487.3Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C3206.7Standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C4019.2Standard polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TMS,isomer #2CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C3436.8Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TMS,isomer #2CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C3217.8Standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TMS,isomer #2CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C3758.6Standard polar33892256
LysoPA(20:2(11Z,14Z)/0:0),3TMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3457.3Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),3TMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3237.0Standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),3TMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C3492.3Standard polar33892256
LysoPA(20:2(11Z,14Z)/0:0),1TBDMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O)O)O[Si](C)(C)C(C)(C)C3775.5Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),1TBDMS,isomer #2CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(O)COP(=O)(O)O[Si](C)(C)C(C)(C)C3698.6Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TBDMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3924.9Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TBDMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3492.1Standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TBDMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4046.8Standard polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TBDMS,isomer #2CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(O)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3888.2Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TBDMS,isomer #2CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(O)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3467.9Standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),2TBDMS,isomer #2CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(O)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3864.6Standard polar33892256
LysoPA(20:2(11Z,14Z)/0:0),3TBDMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C4118.6Semi standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),3TBDMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3605.3Standard non polar33892256
LysoPA(20:2(11Z,14Z)/0:0),3TBDMS,isomer #1CCCCC/C=C\C/C=C\CCCCCCCCCC(=O)OCC(COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3640.4Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - LysoPA(20:2(11Z,14Z)/0:0) GC-MS (1 TMS) - 70eV, Positivesplash10-01ot-9450000000-2506ecdea6ccd3f14ffd2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - LysoPA(20:2(11Z,14Z)/0:0) GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPA(20:2(11Z,14Z)/0:0) 10V, Positive-QTOFsplash10-03di-0000900000-d9c442a3e1d989c423742021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPA(20:2(11Z,14Z)/0:0) 20V, Positive-QTOFsplash10-03di-0000900000-d9c442a3e1d989c423742021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPA(20:2(11Z,14Z)/0:0) 40V, Positive-QTOFsplash10-00dm-0950700000-d7a26fd91e4ea0138d472021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPA(20:2(11Z,14Z)/0:0) 10V, Negative-QTOFsplash10-03di-0000900000-1b5535b4ac700d2351da2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPA(20:2(11Z,14Z)/0:0) 20V, Negative-QTOFsplash10-03di-0000900000-1b5535b4ac700d2351da2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - LysoPA(20:2(11Z,14Z)/0:0) 40V, Negative-QTOFsplash10-114i-2905600000-ba4ef30d4cc27550cc9a2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID74851459
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound87977098
PDB IDNot Available
ChEBI ID170130
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Moritz A, De Graan PN, Gispen WH, Wirtz KW: Phosphatidic acid is a specific activator of phosphatidylinositol-4-phosphate kinase. J Biol Chem. 1992 Apr 15;267(11):7207-10. [PubMed:1313792 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. [PubMed:7834746 ]
  7. Moolenaar WH, Kruijer W, Tilly BC, Verlaan I, Bierman AJ, de Laat SW: Growth factor-like action of phosphatidic acid. Nature. 1986 Sep 11-17;323(6084):171-3. [PubMed:3748188 ]
  8. Yang CY, Frohman MA: Mitochondria: signaling with phosphatidic acid. Int J Biochem Cell Biol. 2012 Aug;44(8):1346-50. doi: 10.1016/j.biocel.2012.05.006. Epub 2012 May 15. [PubMed:22609101 ]
  9. Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.
  10. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.