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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2017-08-02 20:49:28 UTC

Update Date

2022-09-22 18:34:30 UTC

HMDB ID

HMDB0094808

Secondary Accession Numbers

HMDB94808

Metabolite Identification

Common Name

3-nonenoylglycine

Description

3-nonenoylglycine belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom. Based on a literature review very few articles have been published on 3-nonenoylglycine.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0094808
     RDKit          3D
3-nonenoylglycine
 34 33  0  0  0  0  0  0  0  0999 V2000
   -4.7075   -0.1372    0.6916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9988    0.4174    1.8936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5873    0.0110    2.0617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6067    0.3707    1.0312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7980   -0.1177   -0.3552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6033    0.4106   -1.1319 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2396   -0.3788   -1.7338 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3873    0.1912   -2.4770 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6149   -0.3506   -1.8392 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7503   -1.7468   -1.8460 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4852    0.4109   -1.3210 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6768   -0.1338   -0.7031 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4414   -0.1277    0.7668 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3699    0.2935    1.2874 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4111   -0.5941    1.6317 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7527   -0.4520    0.9610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8479    0.6694   -0.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1363   -0.9990    0.2864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1326    1.5196    1.9895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5538    0.0099    2.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5327   -1.0798    2.3007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2316    0.4917    3.0277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4414    1.4838    0.9682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5991   -0.0109    1.3812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6516    0.4351   -0.8539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8720   -1.2093   -0.4706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5224    1.4909   -1.1351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1082   -1.4538   -1.6954 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4050    1.2932   -2.3386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3655   -0.0806   -3.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5336   -2.2576   -0.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8097   -1.1985   -1.0104 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5963    0.3948   -0.9909 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3808   -0.6805    1.4045 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  0
  7 28  1  0
  8 29  1  0
  8 30  1  0
 10 31  1  0
 12 32  1  0
 12 33  1  0
 15 34  1  0
M  END


  Mrv1652308021722492D          

 15 14  0  0  0  0            999 V2000
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8099    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5243    3.1895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8099    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    3.6020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5243    2.3645    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    2.3645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    4.4270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9533    3.1895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  2  0  0  0  0
  7  8  1  4  0  0  0
 10  8  1  0  0  0  0
 11  9  1  0  0  0  0
 12  9  1  4  0  0  0
 12 10  2  0  0  0  0
 13 10  1  0  0  0  0
 14 11  2  0  0  0  0
 15 11  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0094808

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCC=CCC(O)=NCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H19NO3/c1-2-3-4-5-6-7-8-10(13)12-9-11(14)15/h6-7H,2-5,8-9H2,1H3,(H,12,13)(H,14,15)

> <INCHI_KEY>
LNCINQRILYPHAB-UHFFFAOYSA-N

> <FORMULA>
C11H19NO3

> <MOLECULAR_WEIGHT>
213.277

> <EXACT_MASS>
213.136493476

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
24.3691372462065

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(1-hydroxynon-3-en-1-ylidene)amino]acetic acid

> <ALOGPS_LOGP>
2.53

> <JCHEM_LOGP>
2.398397653833872

> <ALOGPS_LOGS>
-2.89

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
5.941445023447153

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.0300622209231705

> <JCHEM_PKA_STRONGEST_BASIC>
2.0856431879545725

> <JCHEM_POLAR_SURFACE_AREA>
69.89

> <JCHEM_REFRACTIVITY>
59.318400000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.75e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1-hydroxynon-3-en-1-ylidene)amino]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0094808
     RDKit          3D
3-nonenoylglycine
 34 33  0  0  0  0  0  0  0  0999 V2000
   -4.7075   -0.1372    0.6916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9988    0.4174    1.8936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5873    0.0110    2.0617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6067    0.3707    1.0312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7980   -0.1177   -0.3552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6033    0.4106   -1.1319 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2396   -0.3788   -1.7338 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3873    0.1912   -2.4770 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6149   -0.3506   -1.8392 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7503   -1.7468   -1.8460 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4852    0.4109   -1.3210 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6768   -0.1338   -0.7031 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4414   -0.1277    0.7668 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3699    0.2935    1.2874 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4111   -0.5941    1.6317 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7527   -0.4520    0.9610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8479    0.6694   -0.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1363   -0.9990    0.2864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1326    1.5196    1.9895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5538    0.0099    2.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5327   -1.0798    2.3007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2316    0.4917    3.0277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4414    1.4838    0.9682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5991   -0.0109    1.3812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6516    0.4351   -0.8539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8720   -1.2093   -0.4706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5224    1.4909   -1.1351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1082   -1.4538   -1.6954 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4050    1.2932   -2.3386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3655   -0.0806   -3.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5336   -2.2576   -0.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8097   -1.1985   -1.0104 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5963    0.3948   -0.9909 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3808   -0.6805    1.4045 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  0
  7 28  1  0
  8 29  1  0
  8 30  1  0
 10 31  1  0
 12 32  1  0
 12 33  1  0
 15 34  1  0
M  END

HEADER    PROTEIN                                 02-AUG-17   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-AUG-17         0                                  
HETATM    1  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.311   2.104   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.645   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.978   2.104   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.312   5.954   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.978   3.644   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.646   6.724   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      10.312   4.414   0.000  0.00  0.00           N+0
HETATM   13  O   UNK     0       7.645   4.414   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      11.646   8.264   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      12.979   5.954   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7   10                                                       
CONECT    9   11   12                                                       
CONECT   10    8   12   13                                                  
CONECT   11    9   14   15                                                  
CONECT   12    9   10                                                       
CONECT   13   10                                                            
CONECT   14   11                                                            
CONECT   15   11                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   28    0
END

COMPND    HMDB0094808
HETATM    1  C1  UNL     1      -4.707  -0.137   0.692  1.00  0.00           C  
HETATM    2  C2  UNL     1      -3.999   0.417   1.894  1.00  0.00           C  
HETATM    3  C3  UNL     1      -2.587   0.011   2.062  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.607   0.371   1.031  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.798  -0.118  -0.355  1.00  0.00           C  
HETATM    6  C6  UNL     1      -0.603   0.411  -1.132  1.00  0.00           C  
HETATM    7  C7  UNL     1       0.240  -0.379  -1.734  1.00  0.00           C  
HETATM    8  C8  UNL     1       1.387   0.191  -2.477  1.00  0.00           C  
HETATM    9  C9  UNL     1       2.615  -0.351  -1.839  1.00  0.00           C  
HETATM   10  O1  UNL     1       2.750  -1.747  -1.846  1.00  0.00           O  
HETATM   11  N1  UNL     1       3.485   0.411  -1.321  1.00  0.00           N  
HETATM   12  C10 UNL     1       4.677  -0.134  -0.703  1.00  0.00           C  
HETATM   13  C11 UNL     1       4.441  -0.128   0.767  1.00  0.00           C  
HETATM   14  O2  UNL     1       3.370   0.294   1.287  1.00  0.00           O  
HETATM   15  O3  UNL     1       5.411  -0.594   1.632  1.00  0.00           O  
HETATM   16  H1  UNL     1      -5.753  -0.452   0.961  1.00  0.00           H  
HETATM   17  H2  UNL     1      -4.848   0.669  -0.043  1.00  0.00           H  
HETATM   18  H3  UNL     1      -4.136  -0.999   0.286  1.00  0.00           H  
HETATM   19  H4  UNL     1      -4.133   1.520   1.990  1.00  0.00           H  
HETATM   20  H5  UNL     1      -4.554   0.010   2.794  1.00  0.00           H  
HETATM   21  H6  UNL     1      -2.533  -1.080   2.301  1.00  0.00           H  
HETATM   22  H7  UNL     1      -2.232   0.492   3.028  1.00  0.00           H  
HETATM   23  H8  UNL     1      -1.441   1.484   0.968  1.00  0.00           H  
HETATM   24  H9  UNL     1      -0.599  -0.011   1.381  1.00  0.00           H  
HETATM   25  H10 UNL     1      -2.652   0.435  -0.854  1.00  0.00           H  
HETATM   26  H11 UNL     1      -1.872  -1.209  -0.471  1.00  0.00           H  
HETATM   27  H12 UNL     1      -0.522   1.491  -1.135  1.00  0.00           H  
HETATM   28  H13 UNL     1       0.108  -1.454  -1.695  1.00  0.00           H  
HETATM   29  H14 UNL     1       1.405   1.293  -2.339  1.00  0.00           H  
HETATM   30  H15 UNL     1       1.365  -0.081  -3.555  1.00  0.00           H  
HETATM   31  H16 UNL     1       2.534  -2.258  -0.978  1.00  0.00           H  
HETATM   32  H17 UNL     1       4.810  -1.199  -1.010  1.00  0.00           H  
HETATM   33  H18 UNL     1       5.596   0.395  -0.991  1.00  0.00           H  
HETATM   34  H19 UNL     1       6.381  -0.680   1.405  1.00  0.00           H  
CONECT    1    2   16   17   18
CONECT    2    3   19   20
CONECT    3    4   21   22
CONECT    4    5   23   24
CONECT    5    6   25   26
CONECT    6    7    7   27
CONECT    7    8   28
CONECT    8    9   29   30
CONECT    9   10   11   11
CONECT   10   31
CONECT   11   12
CONECT   12   13   32   33
CONECT   13   14   14   15
CONECT   15   34
END

HMDB0094808
     RDKit          3D
3-nonenoylglycine
 34 33  0  0  0  0  0  0  0  0999 V2000
   -4.7075   -0.1372    0.6916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9988    0.4174    1.8936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5873    0.0110    2.0617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6067    0.3707    1.0312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7980   -0.1177   -0.3552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6033    0.4106   -1.1319 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2396   -0.3788   -1.7338 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3873    0.1912   -2.4770 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6149   -0.3506   -1.8392 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7503   -1.7468   -1.8460 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4852    0.4109   -1.3210 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6768   -0.1338   -0.7031 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4414   -0.1277    0.7668 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3699    0.2935    1.2874 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4111   -0.5941    1.6317 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7527   -0.4520    0.9610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8479    0.6694   -0.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1363   -0.9990    0.2864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1326    1.5196    1.9895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5538    0.0099    2.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5327   -1.0798    2.3007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2316    0.4917    3.0277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4414    1.4838    0.9682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5991   -0.0109    1.3812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6516    0.4351   -0.8539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8720   -1.2093   -0.4706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5224    1.4909   -1.1351 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1082   -1.4538   -1.6954 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4050    1.2932   -2.3386 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3655   -0.0806   -3.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5336   -2.2576   -0.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8097   -1.1985   -1.0104 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5963    0.3948   -0.9909 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3808   -0.6805    1.4045 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  0
  7 28  1  0
  8 29  1  0
  8 30  1  0
 10 31  1  0
 12 32  1  0
 12 33  1  0
 15 34  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
2-[(1-Hydroxynon-3-en-1-ylidene)amino]acetate	HMDB

Chemical Formula

C₁₁H₁₉NO₃

Average Molecular Weight

213.277

Monoisotopic Molecular Weight

213.136493476

IUPAC Name

2-[(1-hydroxynon-3-en-1-ylidene)amino]acetic acid

Traditional Name

[(1-hydroxynon-3-en-1-ylidene)amino]acetic acid

CAS Registry Number

Not Available

SMILES

CCCCCC=CCC(O)=NCC(O)=O

InChI Identifier

InChI=1S/C11H19NO3/c1-2-3-4-5-6-7-8-10(13)12-9-11(14)15/h6-7H,2-5,8-9H2,1H3,(H,12,13)(H,14,15)

InChI Key

LNCINQRILYPHAB-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids

Alternative Parents

Substituents

N-acyl-alpha-amino acid
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carbonyl group
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Urine (PMID: 20971021)

Source

Exogenous

Exogenous (HMDB: HMDB0094808)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	2.53	ALOGPS
logP	2.4	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	4.03	ChemAxon
pKa (Strongest Basic)	2.09	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	69.89 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	59.32 m³·mol⁻¹	ChemAxon
Polarizability	24.37 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	154.264	31661259
DarkChem	[M-H]-	151.404	31661259
DeepCCS	[M+H]+	149.322	30932474
DeepCCS	[M-H]-	145.298	30932474
DeepCCS	[M-2H]-	182.875	30932474
DeepCCS	[M+Na]+	158.54	30932474
AllCCS	[M+H]+	152.0	32859911
AllCCS	[M+H-H2O]+	148.5	32859911
AllCCS	[M+NH4]+	155.3	32859911
AllCCS	[M+Na]+	156.3	32859911
AllCCS	[M-H]-	153.2	32859911
AllCCS	[M+Na-2H]-	154.3	32859911
AllCCS	[M+HCOO]-	155.7	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	4.56 minutes	32390414
Predicted by Siyang on May 30, 2022	11.9795 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	2.14 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	1861.9 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	293.4 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	140.9 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	192.9 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	242.3 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	485.2 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	451.7 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	102.2 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1040.6 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	416.9 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1223.1 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	336.8 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	354.3 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	364.4 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	222.3 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	10.2 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
3-nonenoylglycine	CCCCCC=CCC(O)=NCC(O)=O	2737.3	Standard polar	33892256
3-nonenoylglycine	CCCCCC=CCC(O)=NCC(O)=O	1664.8	Standard non polar	33892256
3-nonenoylglycine	CCCCCC=CCC(O)=NCC(O)=O	1801.5	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
3-nonenoylglycine,1TMS,isomer #1	CCCCCC=CCC(=NCC(=O)O)O[Si](C)(C)C	1909.1	Semi standard non polar	33892256
3-nonenoylglycine,1TMS,isomer #2	CCCCCC=CCC(O)=NCC(=O)O[Si](C)(C)C	1833.0	Semi standard non polar	33892256
3-nonenoylglycine,2TMS,isomer #1	CCCCCC=CCC(=NCC(=O)O[Si](C)(C)C)O[Si](C)(C)C	1908.4	Semi standard non polar	33892256
3-nonenoylglycine,1TBDMS,isomer #1	CCCCCC=CCC(=NCC(=O)O)O[Si](C)(C)C(C)(C)C	2120.3	Semi standard non polar	33892256
3-nonenoylglycine,1TBDMS,isomer #2	CCCCCC=CCC(O)=NCC(=O)O[Si](C)(C)C(C)(C)C	2059.3	Semi standard non polar	33892256
3-nonenoylglycine,2TBDMS,isomer #1	CCCCCC=CCC(=NCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	2322.4	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 3-nonenoylglycine GC-MS (Non-derivatized) - 70eV, Positive	splash10-052f-9400000000-2eeee02b33a419ca3f9b	2017-09-14	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 3-nonenoylglycine GC-MS (2 TMS) - 70eV, Positive	splash10-01yc-9232000000-8d25ee929ec00647eeae	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 3-nonenoylglycine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 10V, Negative-QTOF	splash10-03di-0490000000-16625968e9f7b5d8cc95	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 20V, Negative-QTOF	splash10-03k9-3940000000-4ce8955932b5f86e05fe	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 40V, Negative-QTOF	splash10-00dl-9200000000-87dc2443293f2f15b358	2017-09-14	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 10V, Positive-QTOF	splash10-0229-9330000000-832f18205231877333a6	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 20V, Positive-QTOF	splash10-00fr-9100000000-10cb5a07341c15e10e12	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 40V, Positive-QTOF	splash10-0adi-9000000000-8a1dd85ef7317ce90ffb	2017-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 10V, Positive-QTOF	splash10-08fr-9650000000-32d845d457b14decd18b	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 20V, Positive-QTOF	splash10-0aor-9000000000-df6676c599caef6320c9	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 40V, Positive-QTOF	splash10-0ar3-9000000000-2dbe17f4a43a57a05d33	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 10V, Negative-QTOF	splash10-0229-9250000000-080635fad6d1bb277450	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 20V, Negative-QTOF	splash10-0229-9830000000-2a0f131c79f64b6db9c9	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-nonenoylglycine 40V, Negative-QTOF	splash10-05fr-9000000000-058d93b5a490afdfac24	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood
Urine

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Urine	Detected but not Quantified	Not Quantified	Adult (24-38years old)	Not Specified	Normal	20971021	details

Abnormal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Expected but not Quantified	Not Quantified	Not Specified	Not Specified	Cancer patients undergoing total body irradiation	31424920	details

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for 3-nonenoylglycine (HMDB0094808)

MOL for HMDB0094808 (3-nonenoylglycine)

3D MOL for HMDB0094808 (3-nonenoylglycine)

3D SDF for HMDB0094808 (3-nonenoylglycine)

3D-SDF for HMDB0094808 (3-nonenoylglycine)

PDB for HMDB0094808 (3-nonenoylglycine)

3D PDB for HMDB0094808 (3-nonenoylglycine)

SMILES for HMDB0094808 (3-nonenoylglycine)

INCHI for HMDB0094808 (3-nonenoylglycine)

Structure for HMDB0094808 (3-nonenoylglycine)

3D Structure for HMDB0094808 (3-nonenoylglycine)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra