Hmdb loader

Showing metabocard for 15Z-tetracosenoyl-CoA (HMDB0062221)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-03-16 03:34:02 UTC
Update Date2022-03-07 03:17:50 UTC
HMDB IDHMDB0062221
Secondary Accession Numbers
  • HMDB62221
Metabolite Identification
Common Name15Z-tetracosenoyl-CoA
DescriptionNervonoyl-CoA, also known as tetracosenoyl-CoA, belongs to the class of organic compounds known as very long-chain fatty acyl coas. These are acyl CoAs where the group acylated to the coenzyme A moiety is a very long aliphatic chain of 22 carbon atoms or more. Thus, nervonoyl-CoA is considered to be a fatty ester lipid molecule. Nervonoyl-CoA is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
Data?1563866281
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0062221 (15Z-tetracosenoyl-CoA)

            
  Mrv1652309151720252D          

 73 75  0  0  1  0            999 V2000
   17.7687  -10.9937    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   17.1012  -10.5088    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.5138  -11.7783    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.4338  -10.9937    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.6888  -11.7783    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   17.9987  -12.4458    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.0231  -15.0347    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7657  -15.4472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3085  -15.4472    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.5941  -15.0347    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8795  -15.4472    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.3369  -13.7972    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5941  -14.2097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3369  -12.9722    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.9080  -12.9722    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.6224  -12.5596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0513  -11.7346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9244  -10.6077    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3369  -11.3221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7494  -10.6077    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6224  -11.7346    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.9080  -11.3221    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7657  -11.3221    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.4157  -11.3221    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.0657  -11.3221    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5907  -10.4971    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5907  -12.1471    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.2407  -10.4971    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.2407  -12.1471    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5907  -11.3221    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   14.2407  -11.3221    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   15.6493  -10.7388    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2038  -12.4458    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.3788  -13.2708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.0288  -13.2708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.2038  -13.2708    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   16.2038  -14.0958    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.5533  -10.7388    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.1666  -11.2908    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8888   -9.9850    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   19.1666  -12.1158    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.7094  -10.0713    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   20.5954  -11.2907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.8810  -12.5282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5954  -12.1157    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.3098  -10.8782    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.7657  -16.2722    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   12.4802  -17.5097    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.4802  -16.6848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1947  -16.2722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9093  -16.6848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6237  -16.2722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3381  -16.6848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.0526  -16.2722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7670  -16.6848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7682  -16.2727    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4826  -16.6850    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1970  -16.2727    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1970  -15.4477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4825  -15.0351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7680  -15.4474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.0536  -15.0350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.3390  -15.4473    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6246  -15.0348    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9100  -15.4472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1956  -15.0348    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4814  -16.2724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1960  -16.6850    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9104  -16.2724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6248  -16.6850    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.3393  -16.2724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.0537  -16.6850    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 38  1  1  0  0  0
  2  1  1  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  3  6  1  6  0  0  0
  4 32  1  1  0  0  0
  5  4  1  0  0  0  0
  5 33  1  6  0  0  0
  9  7  1  0  0  0  0
  7  8  1  0  0  0  0
 10  9  1  0  0  0  0
 13 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 14  1  0  0  0  0
 13 12  1  0  0  0  0
 16 14  1  0  0  0  0
 16 15  2  0  0  0  0
 16 21  1  0  0  0  0
 19 17  1  0  0  0  0
 17 23  1  0  0  0  0
 19 18  1  0  0  0  0
 21 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 22  1  6  0  0  0
 23 30  1  0  0  0  0
 30 24  1  0  0  0  0
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 30 26  2  0  0  0  0
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 31 28  2  0  0  0  0
 31 29  1  0  0  0  0
 33 36  1  0  0  0  0
 36 34  1  0  0  0  0
 36 35  1  0  0  0  0
 36 37  2  0  0  0  0
 39 38  1  0  0  0  0
 40 38  1  0  0  0  0
 41 39  2  0  0  0  0
 42 39  1  0  0  0  0
 43 40  2  0  0  0  0
 44 41  1  0  0  0  0
 43 41  1  0  0  0  0
 45 42  2  0  0  0  0
 46 44  2  0  0  0  0
 47 44  1  0  0  0  0
 46 45  1  0  0  0  0
 48 50  1  0  0  0  0
 50 49  2  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
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 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
  8 48  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  2  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
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 68 69  1  0  0  0  0
 69 70  1  0  0  0  0
 70 71  1  0  0  0  0
 71 72  1  0  0  0  0
 72 73  1  0  0  0  0
 56 68  1  0  0  0  0
 73 57  1  0  0  0  0
M  END
Download

3D MOL for HMDB0062221 (15Z-tetracosenoyl-CoA)

HMDB0062221
     RDKit          3D
15Z-tetracosenoyl-CoA
153155  0  0  0  0  0  0  0  0999 V2000
    1.6795   -9.4228   -3.8153 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3699   -8.3951   -2.9060 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5344   -7.1294   -2.9201 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1479   -7.3530   -2.4227 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0310   -7.8557   -1.0265 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6163   -6.9481    0.0304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0153   -5.5936    0.0265 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5066   -4.6685    1.0775 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9235   -4.3594    1.0516 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3910   -3.1457    0.8869 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5257   -1.9943    0.7062 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6654   -0.9644    1.7762 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0755   -0.3677    1.9237 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9680    0.6649    3.0027 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1413    1.4298    3.4089 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8207    2.2279    2.3229 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9535    3.0590    2.9321 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3669    4.0532    3.9276 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4866    5.0491    3.2187 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7378    5.9618    4.1971 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9506    6.9662    3.4023 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0438    7.8432    4.2310 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9681    6.9846    4.9192 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0599    7.8061    5.7330 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1630    9.0416    5.5595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1271    7.2482    6.9015 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4533    5.5353    7.0604 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3607    4.8228    6.1588 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2167    4.7166    4.7711 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1430    4.1795    4.0400 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1377    3.7459    4.6546 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2541    4.1491    2.5368 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1458    4.0042    2.0439 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3323    3.8991    0.6304 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1328    2.8702   -0.1826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7887    1.9431    0.4455 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0057    2.6718   -1.6134 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3610    1.3709   -2.0023 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2098    3.1975   -2.3018 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2948    4.7022   -2.2345 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4923    2.6863   -1.5945 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3667    2.7663   -3.7224 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4723    1.4171   -3.9489 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7222    1.0380   -5.5598 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.7189    2.3283   -6.3781 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3056    0.4097   -5.7006 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6819   -0.0942   -6.1737 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5838   -1.5103   -5.3125 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.0479   -1.3778   -3.8840 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4665   -2.7639   -6.0154 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0633   -1.9878   -5.3015 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5617   -1.9924   -4.0268 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0232   -2.4013   -3.9673 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3681   -2.3740   -2.5905 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7485   -2.3728   -2.5901 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3019   -2.0350   -1.3051 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6160   -1.9509   -1.0467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8049   -1.6299    0.2334 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6178   -1.5031    0.8113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2247   -1.1836    2.1139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1956   -0.9250    3.0951 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8848   -1.1479    2.3282 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9846   -1.4026    1.3563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3603   -1.7112    0.0986 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6669   -1.7563   -0.1509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1007   -1.3025   -3.5986 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.2897   -1.4993   -4.2496 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8926   -1.3274   -4.4971 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1864   -1.3518   -5.8397 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7526    0.0226   -6.6808 P   0  0  0  0  0  5  0  0  0  0  0  0
   -3.6632   -0.1572   -8.1612 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9656    1.1971   -6.3880 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2994    0.7121   -6.1730 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2011  -10.1810   -3.1647 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4577   -9.9641   -4.4164 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9265   -8.9455   -4.4757 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5212   -8.8260   -1.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3724   -8.1592   -3.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4429   -6.8647   -4.0172 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0897   -6.3270   -2.4437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4780   -6.4288   -2.5085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3289   -8.1298   -3.0804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0333   -8.0454   -0.8152 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0062221 (15Z-tetracosenoyl-CoA)

            
  Mrv1652309151720252D          

 73 75  0  0  1  0            999 V2000
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 46 44  2  0  0  0  0
 47 44  1  0  0  0  0
 46 45  1  0  0  0  0
 48 50  1  0  0  0  0
 50 49  2  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
  8 48  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  2  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
 61 62  1  0  0  0  0
 62 63  1  0  0  0  0
 63 64  1  0  0  0  0
 64 65  1  0  0  0  0
 65 66  1  0  0  0  0
 66 67  1  0  0  0  0
 68 69  1  0  0  0  0
 69 70  1  0  0  0  0
 70 71  1  0  0  0  0
 71 72  1  0  0  0  0
 72 73  1  0  0  0  0
 56 68  1  0  0  0  0
 73 57  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0062221

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCC\C=C/CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N

> <INCHI_IDENTIFIER>
InChI=1S/C45H80N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-36(54)73-29-28-47-35(53)26-27-48-43(57)40(56)45(2,3)31-66-72(63,64)69-71(61,62)65-30-34-39(68-70(58,59)60)38(55)44(67-34)52-33-51-37-41(46)49-32-50-42(37)52/h11-12,32-34,38-40,44,55-56H,4-10,13-31H2,1-3H3,(H,47,53)(H,48,57)(H,61,62)(H,63,64)(H2,46,49,50)(H2,58,59,60)/b12-11-/t34-,38-,39-,40+,44-/m1/s1

> <INCHI_KEY>
QHZAQVTVYPHLKK-YVBAAGQKSA-N

> <FORMULA>
C45H80N7O17P3S

> <MOLECULAR_WEIGHT>
1116.15

> <EXACT_MASS>
1115.454426312

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_ATOM_COUNT>
153

> <JCHEM_AVERAGE_POLARIZABILITY>
116.92633330166188

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-{[2-({2-[(15Z)-tetracos-15-enoylsulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid

> <ALOGPS_LOGP>
4.33

> <JCHEM_LOGP>
3.7929370421853768

> <ALOGPS_LOGS>
-4.07

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-4

> <JCHEM_PKA>
1.9001207347761846

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8209787813398228

> <JCHEM_PKA_STRONGEST_BASIC>
4.006053268556904

> <JCHEM_POLAR_SURFACE_AREA>
363.6299999999999

> <JCHEM_REFRACTIVITY>
274.5725

> <JCHEM_ROTATABLE_BOND_COUNT>
41

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.58e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-({[hydroxy([hydroxy((3R)-3-hydroxy-2,2-dimethyl-3-{[2-({2-[(15Z)-tetracos-15-enoylsulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}propoxy)phosphoryl]oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0062221 (15Z-tetracosenoyl-CoA)

HMDB0062221
     RDKit          3D
15Z-tetracosenoyl-CoA
153155  0  0  0  0  0  0  0  0999 V2000
    1.6795   -9.4228   -3.8153 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3699   -8.3951   -2.9060 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5344   -7.1294   -2.9201 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1479   -7.3530   -2.4227 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0310   -7.8557   -1.0265 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6163   -6.9481    0.0304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0153   -5.5936    0.0265 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5066   -4.6685    1.0775 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9235   -4.3594    1.0516 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3910   -3.1457    0.8869 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5257   -1.9943    0.7062 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6654   -0.9644    1.7762 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0755   -0.3677    1.9237 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9680    0.6649    3.0027 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1413    1.4298    3.4089 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8207    2.2279    2.3229 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9535    3.0590    2.9321 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3669    4.0532    3.9276 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4866    5.0491    3.2187 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7378    5.9618    4.1971 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9506    6.9662    3.4023 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0438    7.8432    4.2310 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9681    6.9846    4.9192 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0599    7.8061    5.7330 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1630    9.0416    5.5595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1271    7.2482    6.9015 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4533    5.5353    7.0604 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3607    4.8228    6.1588 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2167    4.7166    4.7711 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1430    4.1795    4.0400 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1377    3.7459    4.6546 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2541    4.1491    2.5368 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1458    4.0042    2.0439 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3323    3.8991    0.6304 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1328    2.8702   -0.1826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7887    1.9431    0.4455 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0057    2.6718   -1.6134 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3610    1.3709   -2.0023 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2098    3.1975   -2.3018 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2948    4.7022   -2.2345 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4923    2.6863   -1.5945 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3667    2.7663   -3.7224 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4723    1.4171   -3.9489 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7222    1.0380   -5.5598 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.7189    2.3283   -6.3781 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3056    0.4097   -5.7006 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6819   -0.0942   -6.1737 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5838   -1.5103   -5.3125 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.0479   -1.3778   -3.8840 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4665   -2.7639   -6.0154 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0633   -1.9878   -5.3015 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5617   -1.9924   -4.0268 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0232   -2.4013   -3.9673 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3681   -2.3740   -2.5905 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7485   -2.3728   -2.5901 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3019   -2.0350   -1.3051 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6160   -1.9509   -1.0467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8049   -1.6299    0.2334 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6178   -1.5031    0.8113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2247   -1.1836    2.1139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1956   -0.9250    3.0951 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8848   -1.1479    2.3282 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9846   -1.4026    1.3563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3603   -1.7112    0.0986 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6669   -1.7563   -0.1509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1007   -1.3025   -3.5986 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.2897   -1.4993   -4.2496 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8926   -1.3274   -4.4971 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1864   -1.3518   -5.8397 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7526    0.0226   -6.6808 P   0  0  0  0  0  5  0  0  0  0  0  0
   -3.6632   -0.1572   -8.1612 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9656    1.1971   -6.3880 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2994    0.7121   -6.1730 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2011  -10.1810   -3.1647 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4577   -9.9641   -4.4164 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9265   -8.9455   -4.4757 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5212   -8.8260   -1.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3724   -8.1592   -3.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4429   -6.8647   -4.0172 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0897   -6.3270   -2.4437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4780   -6.4288   -2.5085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3289   -8.1298   -3.0804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0333   -8.0454   -0.8152 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5441   -8.8405   -0.9050 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7036   -6.9341   -0.0178 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3275   -7.4276    1.0107 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0275   -5.1588   -0.9978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1081   -5.7402    0.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3727   -5.2862    2.0547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2009   -3.8515    1.2444 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6405   -5.2103    1.1821 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4844   -2.9444    0.8772 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8026   -1.4653   -0.2576 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4420   -2.1859    0.5944 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9429   -0.1185    1.6354 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3977   -1.3681    2.7983 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7630   -1.1841    2.1512 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4127    0.0880    0.9792 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5674    0.1551    3.9488 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1034    1.3553    2.7512 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8610    2.0493    4.2916 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9686    0.7628    3.8237 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1074    2.8075    1.7660 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3128    1.5005    1.6475 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7000    2.4584    3.4177 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3971    3.6445    2.1133 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2708    4.6460    4.2721 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9581    3.6191    4.8264 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7157    4.5860    2.6052 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1871    5.6951    2.6205 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3948    6.4592    4.9147 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0555    5.2961    4.7537 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6688    7.6626    2.8476 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3528    6.4919    2.6197 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4652    8.5094    3.5502 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5649    8.4682    4.9587 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4694    6.1948    5.4655 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3470    6.5043    4.1134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8569    5.3357    8.1300 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4413    5.0068    7.1497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4367    3.7375    6.5697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4220    5.1950    6.4282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0319    5.0898    4.1717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8520    3.1973    2.3491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7737    5.0506    2.2298 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6128    3.1497    2.5800 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6986    4.9116    2.4071 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8707    4.6802    0.1902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8776    3.2975   -2.0566 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4550    0.8108   -1.8707 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1620    5.0982   -1.6819 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4817    5.1208   -3.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3203    5.1617   -1.9877 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8090    3.3695   -0.7883 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3210    1.6769   -1.1876 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3276    2.6061   -2.3168 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2451    3.2754   -4.2042 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4922    3.1359   -4.3367 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3472   -0.2994   -6.4011 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1290   -2.4973   -6.6709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9220   -2.6429   -3.3994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4410   -0.9364   -3.6451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2080   -3.3632   -4.4341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1013   -3.3759   -2.8571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4177   -2.1206   -1.7824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3474   -0.0221    3.5646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8285   -1.7085    3.3835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9489   -1.3355    1.6710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1784   -0.3458   -3.0110 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9212   -0.7970   -4.0306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3589   -0.3395   -4.3262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5808    2.1178   -6.5124 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3961    1.4010   -5.4930 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  1  0
 35 36  2  0
 35 37  1  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 39 41  1  0
 39 42  1  0
 42 43  1  0
 43 44  1  0
 44 45  2  0
 44 46  1  0
 44 47  1  0
 47 48  1  0
 48 49  2  0
 48 50  1  0
 48 51  1  0
 51 52  1  0
 52 53  1  0
 53 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  1  0
 57 58  2  0
 58 59  1  0
 59 60  2  0
 60 61  1  0
 60 62  1  0
 62 63  2  0
 63 64  1  0
 64 65  2  0
 55 66  1  0
 66 67  1  0
 66 68  1  0
 68 69  1  0
 69 70  1  0
 70 71  2  0
 70 72  1  0
 70 73  1  0
 68 53  1  0
 65 56  1  0
 65 59  1  0
  1 74  1  0
  1 75  1  0
  1 76  1  0
  2 77  1  0
  2 78  1  0
  3 79  1  0
  3 80  1  0
  4 81  1  0
  4 82  1  0
  5 83  1  0
  5 84  1  0
  6 85  1  0
  6 86  1  0
  7 87  1  0
  7 88  1  0
  8 89  1  0
  8 90  1  0
  9 91  1  0
 10 92  1  0
 11 93  1  0
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 12 95  1  0
 12 96  1  0
 13 97  1  0
 13 98  1  0
 14 99  1  0
 14100  1  0
 15101  1  0
 15102  1  0
 16103  1  0
 16104  1  0
 17105  1  0
 17106  1  0
 18107  1  0
 18108  1  0
 19109  1  0
 19110  1  0
 20111  1  0
 20112  1  0
 21113  1  0
 21114  1  0
 22115  1  0
 22116  1  0
 23117  1  0
 23118  1  0
 27119  1  0
 27120  1  0
 28121  1  0
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 32124  1  0
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 33126  1  0
 33127  1  0
 34128  1  0
 37129  1  6
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 40131  1  0
 40132  1  0
 40133  1  0
 41134  1  0
 41135  1  0
 41136  1  0
 42137  1  0
 42138  1  0
 46139  1  0
 50140  1  0
 52141  1  0
 52142  1  0
 53143  1  6
 55144  1  6
 57145  1  0
 61146  1  0
 61147  1  0
 63148  1  0
 66149  1  1
 67150  1  0
 68151  1  6
 72152  1  0
 73153  1  0
M  END
Download

PDB for HMDB0062221 (15Z-tetracosenoyl-CoA)

HEADER    PROTEIN                                 15-SEP-17   NONE
TITLE     NULL                                                        
COMPND    MOLECULE:                                                   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-SEP-17         0                                  
HETATM    1  C   UNK     0      33.168 -20.522   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      31.922 -19.616   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      32.692 -21.986   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      30.676 -20.522   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      31.152 -21.986   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      33.598 -23.232   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      20.576 -28.065   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      21.963 -28.835   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      19.243 -28.835   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      17.909 -28.065   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      16.575 -28.835   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      19.296 -25.755   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      17.909 -26.525   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0      19.296 -24.215   0.000  0.00  0.00           N+0
HETATM   15  O   UNK     0      16.628 -24.215   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      17.962 -23.445   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      20.629 -21.905   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      18.526 -19.801   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      19.296 -21.135   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      20.066 -19.801   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      17.962 -21.905   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      16.628 -21.135   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      21.963 -21.135   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      25.043 -21.135   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      28.123 -21.135   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      23.503 -19.595   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      23.503 -22.675   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      26.583 -19.595   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      26.583 -22.675   0.000  0.00  0.00           O+0
HETATM   30  P   UNK     0      23.503 -21.135   0.000  0.00  0.00           P+0
HETATM   31  P   UNK     0      26.583 -21.135   0.000  0.00  0.00           P+0
HETATM   32  C   UNK     0      29.212 -20.046   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      30.247 -23.232   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      28.707 -24.772   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      31.787 -24.772   0.000  0.00  0.00           O+0
HETATM   36  P   UNK     0      30.247 -24.772   0.000  0.00  0.00           P+0
HETATM   37  O   UNK     0      30.247 -26.312   0.000  0.00  0.00           O+0
HETATM   38  N   UNK     0      34.633 -20.046   0.000  0.00  0.00           N+0
HETATM   39  C   UNK     0      35.778 -21.076   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      35.259 -18.639   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      37.111 -20.306   0.000  0.00  0.00           C+0
HETATM   42  N   UNK     0      35.778 -22.616   0.000  0.00  0.00           N+0
HETATM   43  N   UNK     0      36.791 -18.800   0.000  0.00  0.00           N+0
HETATM   44  C   UNK     0      38.445 -21.076   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      37.111 -23.386   0.000  0.00  0.00           C+0
HETATM   46  N   UNK     0      38.445 -22.616   0.000  0.00  0.00           N+0
HETATM   47  N   UNK     0      39.778 -20.306   0.000  0.00  0.00           N+0
HETATM   48  S   UNK     0      21.963 -30.375   0.000  0.00  0.00           S+0
HETATM   49  O   UNK     0      23.296 -32.685   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      23.296 -31.145   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      24.630 -30.375   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      25.964 -31.145   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      27.298 -30.375   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      28.631 -31.145   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      29.965 -30.375   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      31.298 -31.145   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      40.634 -30.376   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      41.968 -31.145   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      43.301 -30.376   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      43.301 -28.836   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      41.967 -28.066   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0      40.634 -28.835   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0      39.300 -28.065   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      37.966 -28.835   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      36.633 -28.065   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      35.299 -28.835   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      33.965 -28.065   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0      32.632 -30.375   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0      33.966 -31.145   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0      35.299 -30.375   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0      36.633 -31.145   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0      37.967 -30.375   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0      39.300 -31.145   0.000  0.00  0.00           C+0
CONECT    1   38    2    3                                                  
CONECT    2    1    4                                                       
CONECT    3    1    5    6                                                  
CONECT    4    2   32    5                                                  
CONECT    5    3    4   33                                                  
CONECT    6    3                                                            
CONECT    7    9    8                                                       
CONECT    8    7   48                                                       
CONECT    9    7   10                                                       
CONECT   10    9   13   11                                                  
CONECT   11   10                                                            
CONECT   12   14   13                                                       
CONECT   13   10   12                                                       
CONECT   14   12   16                                                       
CONECT   15   16                                                            
CONECT   16   14   15   21                                                  
CONECT   17   19   23                                                       
CONECT   18   19                                                            
CONECT   19   17   18   21   20                                             
CONECT   20   19                                                            
CONECT   21   16   19   22                                                  
CONECT   22   21                                                            
CONECT   23   17   30                                                       
CONECT   24   30   31                                                       
CONECT   25   31   32                                                       
CONECT   26   30                                                            
CONECT   27   30                                                            
CONECT   28   31                                                            
CONECT   29   31                                                            
CONECT   30   23   24   26   27                                             
CONECT   31   24   25   28   29                                             
CONECT   32    4   25                                                       
CONECT   33    5   36                                                       
CONECT   34   36                                                            
CONECT   35   36                                                            
CONECT   36   33   34   35   37                                             
CONECT   37   36                                                            
CONECT   38    1   39   40                                                  
CONECT   39   38   41   42                                                  
CONECT   40   38   43                                                       
CONECT   41   39   44   43                                                  
CONECT   42   39   45                                                       
CONECT   43   40   41                                                       
CONECT   44   41   46   47                                                  
CONECT   45   42   46                                                       
CONECT   46   44   45                                                       
CONECT   47   44                                                            
CONECT   48   50    8                                                       
CONECT   49   50                                                            
CONECT   50   48   49   51                                                  
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   68                                                       
CONECT   57   58   73                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62   64                                                       
CONECT   64   63   65                                                       
CONECT   65   64   66                                                       
CONECT   66   65   67                                                       
CONECT   67   66                                                            
CONECT   68   69   56                                                       
CONECT   69   68   70                                                       
CONECT   70   69   71                                                       
CONECT   71   70   72                                                       
CONECT   72   71   73                                                       
CONECT   73   72   57                                                       
MASTER        0    0    0    0    0    0    0    0   73    0  150    0
END
Download

3D PDB for HMDB0062221 (15Z-tetracosenoyl-CoA)

COMPND    HMDB0062221
HETATM    1  C1  UNL     1       1.680  -9.423  -3.815  1.00  0.00           C  
HETATM    2  C2  UNL     1       2.370  -8.395  -2.906  1.00  0.00           C  
HETATM    3  C3  UNL     1       1.534  -7.129  -2.920  1.00  0.00           C  
HETATM    4  C4  UNL     1       0.148  -7.353  -2.423  1.00  0.00           C  
HETATM    5  C5  UNL     1       0.031  -7.856  -1.026  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.616  -6.948   0.030  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.015  -5.594   0.026  1.00  0.00           C  
HETATM    8  C8  UNL     1       0.507  -4.668   1.078  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.924  -4.359   1.052  1.00  0.00           C  
HETATM   10  C10 UNL     1       2.391  -3.146   0.887  1.00  0.00           C  
HETATM   11  C11 UNL     1       1.526  -1.994   0.706  1.00  0.00           C  
HETATM   12  C12 UNL     1       1.665  -0.964   1.776  1.00  0.00           C  
HETATM   13  C13 UNL     1       3.075  -0.368   1.924  1.00  0.00           C  
HETATM   14  C14 UNL     1       2.968   0.665   3.003  1.00  0.00           C  
HETATM   15  C15 UNL     1       4.141   1.430   3.409  1.00  0.00           C  
HETATM   16  C16 UNL     1       4.821   2.228   2.323  1.00  0.00           C  
HETATM   17  C17 UNL     1       5.953   3.059   2.932  1.00  0.00           C  
HETATM   18  C18 UNL     1       5.367   4.053   3.928  1.00  0.00           C  
HETATM   19  C19 UNL     1       4.487   5.049   3.219  1.00  0.00           C  
HETATM   20  C20 UNL     1       3.738   5.962   4.197  1.00  0.00           C  
HETATM   21  C21 UNL     1       2.951   6.966   3.402  1.00  0.00           C  
HETATM   22  C22 UNL     1       2.044   7.843   4.231  1.00  0.00           C  
HETATM   23  C23 UNL     1       0.968   6.985   4.919  1.00  0.00           C  
HETATM   24  C24 UNL     1       0.060   7.806   5.733  1.00  0.00           C  
HETATM   25  O1  UNL     1       0.163   9.042   5.560  1.00  0.00           O  
HETATM   26  S1  UNL     1      -1.127   7.248   6.902  1.00  0.00           S  
HETATM   27  C25 UNL     1      -1.453   5.535   7.060  1.00  0.00           C  
HETATM   28  C26 UNL     1      -2.361   4.823   6.159  1.00  0.00           C  
HETATM   29  N1  UNL     1      -2.217   4.717   4.771  1.00  0.00           N  
HETATM   30  C27 UNL     1      -1.143   4.179   4.040  1.00  0.00           C  
HETATM   31  O2  UNL     1      -0.138   3.746   4.655  1.00  0.00           O  
HETATM   32  C28 UNL     1      -1.254   4.149   2.537  1.00  0.00           C  
HETATM   33  C29 UNL     1       0.146   4.004   2.044  1.00  0.00           C  
HETATM   34  N2  UNL     1       0.332   3.899   0.630  1.00  0.00           N  
HETATM   35  C30 UNL     1      -0.133   2.870  -0.183  1.00  0.00           C  
HETATM   36  O3  UNL     1      -0.789   1.943   0.446  1.00  0.00           O  
HETATM   37  C31 UNL     1       0.006   2.672  -1.613  1.00  0.00           C  
HETATM   38  O4  UNL     1      -0.361   1.371  -2.002  1.00  0.00           O  
HETATM   39  C32 UNL     1       1.210   3.197  -2.302  1.00  0.00           C  
HETATM   40  C33 UNL     1       1.295   4.702  -2.234  1.00  0.00           C  
HETATM   41  C34 UNL     1       2.492   2.686  -1.595  1.00  0.00           C  
HETATM   42  C35 UNL     1       1.367   2.766  -3.722  1.00  0.00           C  
HETATM   43  O5  UNL     1       1.472   1.417  -3.949  1.00  0.00           O  
HETATM   44  P1  UNL     1       1.722   1.038  -5.560  1.00  0.00           P  
HETATM   45  O6  UNL     1       1.719   2.328  -6.378  1.00  0.00           O  
HETATM   46  O7  UNL     1       3.306   0.410  -5.701  1.00  0.00           O  
HETATM   47  O8  UNL     1       0.682  -0.094  -6.174  1.00  0.00           O  
HETATM   48  P2  UNL     1       0.584  -1.510  -5.312  1.00  0.00           P  
HETATM   49  O9  UNL     1       1.048  -1.378  -3.884  1.00  0.00           O  
HETATM   50  O10 UNL     1       1.466  -2.764  -6.015  1.00  0.00           O  
HETATM   51  O11 UNL     1      -1.063  -1.988  -5.301  1.00  0.00           O  
HETATM   52  C36 UNL     1      -1.562  -1.992  -4.027  1.00  0.00           C  
HETATM   53  C37 UNL     1      -3.023  -2.401  -3.967  1.00  0.00           C  
HETATM   54  O12 UNL     1      -3.368  -2.374  -2.591  1.00  0.00           O  
HETATM   55  C38 UNL     1      -4.749  -2.373  -2.590  1.00  0.00           C  
HETATM   56  N3  UNL     1      -5.302  -2.035  -1.305  1.00  0.00           N  
HETATM   57  C39 UNL     1      -6.616  -1.951  -1.047  1.00  0.00           C  
HETATM   58  N4  UNL     1      -6.805  -1.630   0.233  1.00  0.00           N  
HETATM   59  C40 UNL     1      -5.618  -1.503   0.811  1.00  0.00           C  
HETATM   60  C41 UNL     1      -5.225  -1.184   2.114  1.00  0.00           C  
HETATM   61  N5  UNL     1      -6.196  -0.925   3.095  1.00  0.00           N  
HETATM   62  N6  UNL     1      -3.885  -1.148   2.328  1.00  0.00           N  
HETATM   63  C42 UNL     1      -2.985  -1.403   1.356  1.00  0.00           C  
HETATM   64  N7  UNL     1      -3.360  -1.711   0.099  1.00  0.00           N  
HETATM   65  C43 UNL     1      -4.667  -1.756  -0.151  1.00  0.00           C  
HETATM   66  C44 UNL     1      -5.101  -1.303  -3.599  1.00  0.00           C  
HETATM   67  O13 UNL     1      -6.290  -1.499  -4.250  1.00  0.00           O  
HETATM   68  C45 UNL     1      -3.893  -1.327  -4.497  1.00  0.00           C  
HETATM   69  O14 UNL     1      -4.186  -1.352  -5.840  1.00  0.00           O  
HETATM   70  P3  UNL     1      -3.753   0.023  -6.681  1.00  0.00           P  
HETATM   71  O15 UNL     1      -3.663  -0.157  -8.161  1.00  0.00           O  
HETATM   72  O16 UNL     1      -4.966   1.197  -6.388  1.00  0.00           O  
HETATM   73  O17 UNL     1      -2.299   0.712  -6.173  1.00  0.00           O  
HETATM   74  H1  UNL     1       1.201 -10.181  -3.165  1.00  0.00           H  
HETATM   75  H2  UNL     1       2.458  -9.964  -4.416  1.00  0.00           H  
HETATM   76  H3  UNL     1       0.926  -8.945  -4.476  1.00  0.00           H  
HETATM   77  H4  UNL     1       2.521  -8.826  -1.915  1.00  0.00           H  
HETATM   78  H5  UNL     1       3.372  -8.159  -3.335  1.00  0.00           H  
HETATM   79  H6  UNL     1       1.443  -6.865  -4.017  1.00  0.00           H  
HETATM   80  H7  UNL     1       2.090  -6.327  -2.444  1.00  0.00           H  
HETATM   81  H8  UNL     1      -0.478  -6.429  -2.509  1.00  0.00           H  
HETATM   82  H9  UNL     1      -0.329  -8.130  -3.080  1.00  0.00           H  
HETATM   83  H10 UNL     1      -1.033  -8.045  -0.815  1.00  0.00           H  
HETATM   84  H11 UNL     1       0.544  -8.841  -0.905  1.00  0.00           H  
HETATM   85  H12 UNL     1       1.704  -6.934  -0.018  1.00  0.00           H  
HETATM   86  H13 UNL     1       0.327  -7.428   1.011  1.00  0.00           H  
HETATM   87  H14 UNL     1       0.027  -5.159  -0.998  1.00  0.00           H  
HETATM   88  H15 UNL     1      -1.108  -5.740   0.247  1.00  0.00           H  
HETATM   89  H16 UNL     1       0.373  -5.286   2.055  1.00  0.00           H  
HETATM   90  H17 UNL     1      -0.201  -3.851   1.244  1.00  0.00           H  
HETATM   91  H18 UNL     1       2.641  -5.210   1.182  1.00  0.00           H  
HETATM   92  H19 UNL     1       3.484  -2.944   0.877  1.00  0.00           H  
HETATM   93  H20 UNL     1       1.803  -1.465  -0.258  1.00  0.00           H  
HETATM   94  H21 UNL     1       0.442  -2.186   0.594  1.00  0.00           H  
HETATM   95  H22 UNL     1       0.943  -0.118   1.635  1.00  0.00           H  
HETATM   96  H23 UNL     1       1.398  -1.368   2.798  1.00  0.00           H  
HETATM   97  H24 UNL     1       3.763  -1.184   2.151  1.00  0.00           H  
HETATM   98  H25 UNL     1       3.413   0.088   0.979  1.00  0.00           H  
HETATM   99  H26 UNL     1       2.567   0.155   3.949  1.00  0.00           H  
HETATM  100  H27 UNL     1       2.103   1.355   2.751  1.00  0.00           H  
HETATM  101  H28 UNL     1       3.861   2.049   4.292  1.00  0.00           H  
HETATM  102  H29 UNL     1       4.969   0.763   3.824  1.00  0.00           H  
HETATM  103  H30 UNL     1       4.107   2.807   1.766  1.00  0.00           H  
HETATM  104  H31 UNL     1       5.313   1.501   1.647  1.00  0.00           H  
HETATM  105  H32 UNL     1       6.700   2.458   3.418  1.00  0.00           H  
HETATM  106  H33 UNL     1       6.397   3.645   2.113  1.00  0.00           H  
HETATM  107  H34 UNL     1       6.271   4.646   4.272  1.00  0.00           H  
HETATM  108  H35 UNL     1       4.958   3.619   4.826  1.00  0.00           H  
HETATM  109  H36 UNL     1       3.716   4.586   2.605  1.00  0.00           H  
HETATM  110  H37 UNL     1       5.187   5.695   2.620  1.00  0.00           H  
HETATM  111  H38 UNL     1       4.395   6.459   4.915  1.00  0.00           H  
HETATM  112  H39 UNL     1       3.055   5.296   4.754  1.00  0.00           H  
HETATM  113  H40 UNL     1       3.669   7.663   2.848  1.00  0.00           H  
HETATM  114  H41 UNL     1       2.353   6.492   2.620  1.00  0.00           H  
HETATM  115  H42 UNL     1       1.465   8.509   3.550  1.00  0.00           H  
HETATM  116  H43 UNL     1       2.565   8.468   4.959  1.00  0.00           H  
HETATM  117  H44 UNL     1       1.469   6.195   5.465  1.00  0.00           H  
HETATM  118  H45 UNL     1       0.347   6.504   4.113  1.00  0.00           H  
HETATM  119  H46 UNL     1      -1.857   5.336   8.130  1.00  0.00           H  
HETATM  120  H47 UNL     1      -0.441   5.007   7.150  1.00  0.00           H  
HETATM  121  H48 UNL     1      -2.437   3.738   6.570  1.00  0.00           H  
HETATM  122  H49 UNL     1      -3.422   5.195   6.428  1.00  0.00           H  
HETATM  123  H50 UNL     1      -3.032   5.090   4.172  1.00  0.00           H  
HETATM  124  H51 UNL     1      -1.852   3.197   2.349  1.00  0.00           H  
HETATM  125  H52 UNL     1      -1.774   5.051   2.230  1.00  0.00           H  
HETATM  126  H53 UNL     1       0.613   3.150   2.580  1.00  0.00           H  
HETATM  127  H54 UNL     1       0.699   4.912   2.407  1.00  0.00           H  
HETATM  128  H55 UNL     1       0.871   4.680   0.190  1.00  0.00           H  
HETATM  129  H56 UNL     1      -0.878   3.297  -2.057  1.00  0.00           H  
HETATM  130  H57 UNL     1       0.455   0.811  -1.871  1.00  0.00           H  
HETATM  131  H58 UNL     1       2.162   5.098  -1.682  1.00  0.00           H  
HETATM  132  H59 UNL     1       1.482   5.121  -3.299  1.00  0.00           H  
HETATM  133  H60 UNL     1       0.320   5.162  -1.988  1.00  0.00           H  
HETATM  134  H61 UNL     1       2.809   3.369  -0.788  1.00  0.00           H  
HETATM  135  H62 UNL     1       2.321   1.677  -1.188  1.00  0.00           H  
HETATM  136  H63 UNL     1       3.328   2.606  -2.317  1.00  0.00           H  
HETATM  137  H64 UNL     1       2.245   3.275  -4.204  1.00  0.00           H  
HETATM  138  H65 UNL     1       0.492   3.136  -4.337  1.00  0.00           H  
HETATM  139  H66 UNL     1       3.347  -0.299  -6.401  1.00  0.00           H  
HETATM  140  H67 UNL     1       2.129  -2.497  -6.671  1.00  0.00           H  
HETATM  141  H68 UNL     1      -0.922  -2.643  -3.399  1.00  0.00           H  
HETATM  142  H69 UNL     1      -1.441  -0.936  -3.645  1.00  0.00           H  
HETATM  143  H70 UNL     1      -3.208  -3.363  -4.434  1.00  0.00           H  
HETATM  144  H71 UNL     1      -5.101  -3.376  -2.857  1.00  0.00           H  
HETATM  145  H72 UNL     1      -7.418  -2.121  -1.782  1.00  0.00           H  
HETATM  146  H73 UNL     1      -6.347  -0.022   3.565  1.00  0.00           H  
HETATM  147  H74 UNL     1      -6.829  -1.708   3.383  1.00  0.00           H  
HETATM  148  H75 UNL     1      -1.949  -1.336   1.671  1.00  0.00           H  
HETATM  149  H76 UNL     1      -5.178  -0.346  -3.011  1.00  0.00           H  
HETATM  150  H77 UNL     1      -6.921  -0.797  -4.031  1.00  0.00           H  
HETATM  151  H78 UNL     1      -3.359  -0.340  -4.326  1.00  0.00           H  
HETATM  152  H79 UNL     1      -4.581   2.118  -6.512  1.00  0.00           H  
HETATM  153  H80 UNL     1      -2.396   1.401  -5.493  1.00  0.00           H  
CONECT    1    2   74   75   76
CONECT    2    3   77   78
CONECT    3    4   79   80
CONECT    4    5   81   82
CONECT    5    6   83   84
CONECT    6    7   85   86
CONECT    7    8   87   88
CONECT    8    9   89   90
CONECT    9   10   10   91
CONECT   10   11   92
CONECT   11   12   93   94
CONECT   12   13   95   96
CONECT   13   14   97   98
CONECT   14   15   99  100
CONECT   15   16  101  102
CONECT   16   17  103  104
CONECT   17   18  105  106
CONECT   18   19  107  108
CONECT   19   20  109  110
CONECT   20   21  111  112
CONECT   21   22  113  114
CONECT   22   23  115  116
CONECT   23   24  117  118
CONECT   24   25   25   26
CONECT   26   27
CONECT   27   28  119  120
CONECT   28   29  121  122
CONECT   29   30  123
CONECT   30   31   31   32
CONECT   32   33  124  125
CONECT   33   34  126  127
CONECT   34   35  128
CONECT   35   36   36   37
CONECT   37   38   39  129
CONECT   38  130
CONECT   39   40   41   42
CONECT   40  131  132  133
CONECT   41  134  135  136
CONECT   42   43  137  138
CONECT   43   44
CONECT   44   45   45   46   47
CONECT   46  139
CONECT   47   48
CONECT   48   49   49   50   51
CONECT   50  140
CONECT   51   52
CONECT   52   53  141  142
CONECT   53   54   68  143
CONECT   54   55
CONECT   55   56   66  144
CONECT   56   57   65
CONECT   57   58   58  145
CONECT   58   59
CONECT   59   60   60   65
CONECT   60   61   62
CONECT   61  146  147
CONECT   62   63   63
CONECT   63   64  148
CONECT   64   65   65
CONECT   66   67   68  149
CONECT   67  150
CONECT   68   69  151
CONECT   69   70
CONECT   70   71   71   72   73
CONECT   72  152
CONECT   73  153
END
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SMILES for HMDB0062221 (15Z-tetracosenoyl-CoA)

CCCCCCCC\C=C/CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
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INCHI for HMDB0062221 (15Z-tetracosenoyl-CoA)

InChI=1S/C45H80N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-36(54)73-29-28-47-35(53)26-27-48-43(57)40(56)45(2,3)31-66-72(63,64)69-71(61,62)65-30-34-39(68-70(58,59)60)38(55)44(67-34)52-33-51-37-41(46)49-32-50-42(37)52/h11-12,32-34,38-40,44,55-56H,4-10,13-31H2,1-3H3,(H,47,53)(H,48,57)(H,61,62)(H,63,64)(H2,46,49,50)(H2,58,59,60)/b12-11-/t34-,38-,39-,40+,44-/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
(15Z)-Tetracosenoyl-coenzyme AChEBI
(Z)-15-Tetracosenoyl-CoAChEBI
15cis-Tetracosenoyl-CoAChEBI
15cis-Tetracosenoyl-coenzyme AChEBI
Nervonoyl-coenzyme AChEBI
Tetracosenoyl-CoAChEBI
(15Z)-Tetracosenoyl-CoAKegg
CoA(24:1(15Z))SMPDB, HMDB
Nervonoyl-CoASMPDB, ChEBI
Chemical FormulaC45H80N7O17P3S
Average Molecular Weight1116.15
Monoisotopic Molecular Weight1115.454426312
IUPAC Name{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-{[2-({2-[(15Z)-tetracos-15-enoylsulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid
Traditional Name[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-({[hydroxy([hydroxy((3R)-3-hydroxy-2,2-dimethyl-3-{[2-({2-[(15Z)-tetracos-15-enoylsulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}propoxy)phosphoryl]oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxyphosphonic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCC\C=C/CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C45H80N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-36(54)73-29-28-47-35(53)26-27-48-43(57)40(56)45(2,3)31-66-72(63,64)69-71(61,62)65-30-34-39(68-70(58,59)60)38(55)44(67-34)52-33-51-37-41(46)49-32-50-42(37)52/h11-12,32-34,38-40,44,55-56H,4-10,13-31H2,1-3H3,(H,47,53)(H,48,57)(H,61,62)(H,63,64)(H2,46,49,50)(H2,58,59,60)/b12-11-/t34-,38-,39-,40+,44-/m1/s1
InChI KeyQHZAQVTVYPHLKK-YVBAAGQKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as very long-chain fatty acyl coas. These are acyl CoAs where the group acylated to the coenzyme A moiety is a very long aliphatic chain of 22 carbon atoms or more.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl thioesters
Direct ParentVery long-chain fatty acyl CoAs
Alternative Parents
Substituents
  • Coenzyme a or derivatives
  • Purine ribonucleoside 3',5'-bisphosphate
  • Purine ribonucleoside bisphosphate
  • Purine ribonucleoside diphosphate
  • Ribonucleoside 3'-phosphate
  • Pentose phosphate
  • Pentose-5-phosphate
  • Beta amino acid or derivatives
  • Glycosyl compound
  • N-glycosyl compound
  • 6-aminopurine
  • Monosaccharide phosphate
  • Organic pyrophosphate
  • Pentose monosaccharide
  • Imidazopyrimidine
  • Purine
  • Monoalkyl phosphate
  • Aminopyrimidine
  • Imidolactam
  • N-acyl-amine
  • N-substituted imidazole
  • Organic phosphoric acid derivative
  • Monosaccharide
  • Pyrimidine
  • Alkyl phosphate
  • Fatty amide
  • Phosphoric acid ester
  • Tetrahydrofuran
  • Imidazole
  • Azole
  • Heteroaromatic compound
  • Carbothioic s-ester
  • Secondary alcohol
  • Thiocarboxylic acid ester
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Azacycle
  • Oxacycle
  • Carboxylic acid derivative
  • Organosulfur compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic nitrogen compound
  • Primary amine
  • Organopnictogen compound
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.096 g/lALOGPS
LogP4.33ALOGPS
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.33ALOGPS
logP3.79ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)0.82ChemAxon
pKa (Strongest Basic)4.01ChemAxon
Physiological Charge-4ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area363.63 ŲChemAxon
Rotatable Bond Count41ChemAxon
Refractivity274.57 m³·mol⁻¹ChemAxon
Polarizability116.93 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+299.03930932474
DeepCCS[M-H]-297.31530932474
DeepCCS[M-2H]-331.80830932474
DeepCCS[M+Na]+305.84830932474
AllCCS[M+H]+316.032859911
AllCCS[M+H-H2O]+316.532859911
AllCCS[M+NH4]+315.532859911
AllCCS[M+Na]+315.432859911
AllCCS[M-H]-308.032859911
AllCCS[M+Na-2H]-313.732859911
AllCCS[M+HCOO]-319.832859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.7.65 minutes32390414
Predicted by Siyang on May 30, 202217.7497 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.51 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid4070.7 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid105.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid274.0 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid165.2 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid347.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid816.1 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid889.0 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)874.9 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1529.4 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid912.5 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1439.7 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid542.9 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid495.2 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate173.3 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA21.2 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.7 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 10V, Positive-QTOFsplash10-000j-3801900200-7a91e412adecc83384152017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 20V, Positive-QTOFsplash10-0079-1801902000-8c5b36ea6ef37835d4132017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 40V, Positive-QTOFsplash10-000i-1900400000-2402c518730b51e7a1e82017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 10V, Negative-QTOFsplash10-0032-5904141400-8ff3f1ccaa3e00e254da2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 20V, Negative-QTOFsplash10-001i-4901120100-402c8b1397ae2a2573fb2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 40V, Negative-QTOFsplash10-057i-5900000000-7ef484be8fc37ee1d10f2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 10V, Negative-QTOFsplash10-03di-0900000000-153e5e05f78b651b3fa02021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 20V, Negative-QTOFsplash10-03fr-6902402400-93abc4eacfea2525a7ea2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 40V, Negative-QTOFsplash10-0570-9101300200-d778c67bd73751bdbc832021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 10V, Positive-QTOFsplash10-014i-0900000000-94def94f7055524f43602021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 20V, Positive-QTOFsplash10-000i-7900100316-1a692904afaf4188252d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 15Z-tetracosenoyl-CoA 40V, Positive-QTOFsplash10-0a4i-0000379000-8174c5d708cab1236acf2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB030177
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDC16532
BioCyc IDCPD-14269
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound71448926
PDB IDNot Available
ChEBI ID74142
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.