| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2013-05-17 00:58:12 UTC |
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| Update Date | 2022-03-07 03:17:44 UTC |
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| HMDB ID | HMDB0060380 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | 3-Polyprenyl-4,5-dihydroxybenzoate |
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| Description | 3-Polyprenyl-4,5-dihydroxybenzoate, also known as 3,4-dihydroxy-5-polyprenylbenzoate, belongs to the class of organic compounds known as hydroxybenzoic acid derivatives. Hydroxybenzoic acid derivatives are compounds containing a hydroxybenzoic acid (or a derivative), which is a benzene ring bearing a carboxyl and a hydroxyl groups. 3-Polyprenyl-4,5-dihydroxybenzoate is an extremely weak basic (essentially neutral) compound (based on its pKa). These are compounds containing an hydroxybenzoic acid (or a derivative), which is a benzene ring bearing a carboxylic acid. |
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| Structure | CC(C)=CCC\C(C)=C\CC1=CC(=CC(O)=C1O)C(O)=O InChI=1S/C17H22O4/c1-11(2)5-4-6-12(3)7-8-13-9-14(17(20)21)10-15(18)16(13)19/h5,7,9-10,18-19H,4,6,8H2,1-3H3,(H,20,21)/b12-7+ |
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| Synonyms | | Value | Source |
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| 3,4-Dihydroxy-5-polyprenylbenzoate | Kegg | | 3,4-Dihydroxy-5-polyprenylbenzoic acid | Generator | | 3-Polyprenyl-4,5-dihydroxybenzoic acid | Generator |
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| Chemical Formula | C17H22O4 |
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| Average Molecular Weight | 290.3542 |
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| Monoisotopic Molecular Weight | 290.151809192 |
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| IUPAC Name | 3-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-4,5-dihydroxybenzoic acid |
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| Traditional Name | 3-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-4,5-dihydroxybenzoic acid |
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| CAS Registry Number | Not Available |
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| SMILES | CC(C)=CCC\C(C)=C\CC1=CC(=CC(O)=C1O)C(O)=O |
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| InChI Identifier | InChI=1S/C17H22O4/c1-11(2)5-4-6-12(3)7-8-13-9-14(17(20)21)10-15(18)16(13)19/h5,7,9-10,18-19H,4,6,8H2,1-3H3,(H,20,21)/b12-7+ |
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| InChI Key | GJZLZMVQYJZMIO-KPKJPENVSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as hydroxybenzoic acid derivatives. Hydroxybenzoic acid derivatives are compounds containing a hydroxybenzoic acid (or a derivative), which is a benzene ring bearing a carboxyl and a hydroxyl groups. |
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| Kingdom | Organic compounds |
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| Super Class | Benzenoids |
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| Class | Benzene and substituted derivatives |
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| Sub Class | Benzoic acids and derivatives |
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| Direct Parent | Hydroxybenzoic acid derivatives |
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| Alternative Parents | |
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| Substituents | - Dihydroxybenzoic acid
- Aromatic monoterpenoid
- Monoterpenoid
- Monocyclic monoterpenoid
- Hydroxybenzoic acid
- Benzoic acid
- Benzoyl
- Catechol
- 1-hydroxy-4-unsubstituted benzenoid
- 1-hydroxy-2-unsubstituted benzenoid
- Phenol
- Carboxylic acid derivative
- Carboxylic acid
- Monocarboxylic acid or derivatives
- Hydrocarbon derivative
- Organic oxygen compound
- Organooxygen compound
- Organic oxide
- Aromatic homomonocyclic compound
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| Molecular Framework | Aromatic homomonocyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Not Available | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm √ó 2.1 mm; 1.7 Œºmparticle diameter). Predicted by Afia on May 17, 2022. | 8.22 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 14.4156 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.17 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 2478.4 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 304.3 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 171.8 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 168.5 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 105.9 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 647.2 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 607.8 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 69.6 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 1269.4 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 584.0 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1240.4 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 421.7 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 426.0 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 252.3 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 251.3 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 8.1 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| 3-Polyprenyl-4,5-dihydroxybenzoate,1TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O)=CC(O[Si](C)(C)C)=C1O | 2561.2 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,1TMS,isomer #2 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O)=CC(O)=C1O[Si](C)(C)C | 2577.7 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,1TMS,isomer #3 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O[Si](C)(C)C)=CC(O)=C1O | 2545.2 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,2TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C1O | 2517.4 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,2TMS,isomer #2 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O)=CC(O[Si](C)(C)C)=C1O[Si](C)(C)C | 2551.4 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,2TMS,isomer #3 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O[Si](C)(C)C)=CC(O)=C1O[Si](C)(C)C | 2501.6 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,3TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O[Si](C)(C)C)=CC(O[Si](C)(C)C)=C1O[Si](C)(C)C | 2504.3 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,1TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O)=CC(O[Si](C)(C)C(C)(C)C)=C1O | 2808.3 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,1TBDMS,isomer #2 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O)=CC(O)=C1O[Si](C)(C)C(C)(C)C | 2820.1 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,1TBDMS,isomer #3 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O[Si](C)(C)C(C)(C)C)=CC(O)=C1O | 2805.1 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,2TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C1O | 2994.5 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,2TBDMS,isomer #2 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O)=CC(O[Si](C)(C)C(C)(C)C)=C1O[Si](C)(C)C(C)(C)C | 3029.3 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,2TBDMS,isomer #3 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O[Si](C)(C)C(C)(C)C)=CC(O)=C1O[Si](C)(C)C(C)(C)C | 2981.1 | Semi standard non polar | 33892256 | | 3-Polyprenyl-4,5-dihydroxybenzoate,3TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC1=CC(C(=O)O[Si](C)(C)C(C)(C)C)=CC(O[Si](C)(C)C(C)(C)C)=C1O[Si](C)(C)C(C)(C)C | 3176.0 | Semi standard non polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate GC-MS (Non-derivatized) - 70eV, Positive | splash10-069r-7690000000-015b7d2d0b422f0695b3 | 2017-09-20 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate GC-MS (3 TMS) - 70eV, Positive | splash10-0006-2000900000-8eec93847eca30d4d05f | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate 10V, Positive-QTOF | splash10-006x-0190000000-df8776d38c479074a0e9 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate 20V, Positive-QTOF | splash10-00di-5970000000-abb0cc8ad1c8ffce718b | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate 40V, Positive-QTOF | splash10-066r-8910000000-f4696c464c172ebc4c08 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate 10V, Negative-QTOF | splash10-000i-0090000000-29ee0071a876ba3bdc70 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate 20V, Negative-QTOF | splash10-000b-0090000000-f296cbae1d1d88253fdc | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Polyprenyl-4,5-dihydroxybenzoate 40V, Negative-QTOF | splash10-0ar0-2790000000-cd1cccdccd796d34a0d2 | 2017-10-06 | Wishart Lab | View Spectrum |
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