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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2013-04-09 21:20:33 UTC
Update Date2022-09-22 18:35:12 UTC
HMDB IDHMDB0060026
Secondary Accession Numbers
  • HMDB60026
Metabolite Identification
Common NameVanilloylglycine
DescriptionVanilloylglycine belongs to the class of organic compounds known as hippuric acids. Hippuric acids are compounds containing hippuric acid, which consists of a of a benzoyl group linked to the N-terminal of a glycine. Vanilloylglycine is a moderately basic compound (based on its pKa). 3-Methoxy-4-hydroxyhippuric acid is one of the main catechins metabolites found in humans after consumption of green tea infusions.
Structure
Data?1563866006
Synonyms
ValueSource
2-[(4-Hydroxy-3-methoxybenzoyl)amino]acetic acidHMDB
3-Methoxy-4-hydroxyhippuric acidHMDB
2-{[hydroxy(4-hydroxy-3-methoxyphenyl)methylidene]amino}acetateGenerator
Chemical FormulaC10H11NO5
Average Molecular Weight225.198
Monoisotopic Molecular Weight225.063722467
IUPAC Name2-{[hydroxy(4-hydroxy-3-methoxyphenyl)methylidene]amino}acetic acid
Traditional Name{[hydroxy(4-hydroxy-3-methoxyphenyl)methylidene]amino}acetic acid
CAS Registry NumberNot Available
SMILES
COC1=C(O)C=CC(=C1)C(O)=NCC(O)=O
InChI Identifier
InChI=1S/C10H11NO5/c1-16-8-4-6(2-3-7(8)12)10(15)11-5-9(13)14/h2-4,12H,5H2,1H3,(H,11,15)(H,13,14)
InChI KeyLOODYTDRRBLQNH-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hippuric acids. Hippuric acids are compounds containing hippuric acid, which consists of a of a benzoyl group linked to the N-terminal of a glycine.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzoic acids and derivatives
Direct ParentHippuric acids
Alternative Parents
Substituents
  • Hippuric acid
  • N-acyl-alpha amino acid or derivatives
  • N-acyl-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Methoxyphenol
  • Phenoxy compound
  • Anisole
  • Benzoyl
  • Methoxybenzene
  • Phenol ether
  • Alkyl aryl ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Carboxylic acid derivative
  • Carboxylic acid
  • Ether
  • Monocarboxylic acid or derivatives
  • Organic oxygen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.24 g/LALOGPS
logP0.74ALOGPS
logP0.75ChemAxon
logS-2.5ALOGPS
pKa (Strongest Acidic)3.22ChemAxon
pKa (Strongest Basic)1.37ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area99.35 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity55.08 m³·mol⁻¹ChemAxon
Polarizability21.53 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+150.85131661259
DarkChem[M-H]-152.17331661259
DeepCCS[M+H]+147.02230932474
DeepCCS[M-H]-144.66430932474
DeepCCS[M-2H]-178.81730932474
DeepCCS[M+Na]+153.65130932474
AllCCS[M+H]+149.232859911
AllCCS[M+H-H2O]+145.332859911
AllCCS[M+NH4]+152.732859911
AllCCS[M+Na]+153.732859911
AllCCS[M-H]-148.432859911
AllCCS[M+Na-2H]-148.732859911
AllCCS[M+HCOO]-149.232859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.2.48 minutes32390414
Predicted by Siyang on May 30, 20229.5951 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20224.43 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1049.6 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid243.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid84.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid160.1 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid58.4 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid289.3 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid298.3 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)214.7 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid630.7 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid234.3 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid935.8 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid215.6 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid234.8 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate483.6 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA249.5 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water199.6 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
VanilloylglycineCOC1=C(O)C=CC(=C1)C(O)=NCC(O)=O3560.2Standard polar33892256
VanilloylglycineCOC1=C(O)C=CC(=C1)C(O)=NCC(O)=O2040.9Standard non polar33892256
VanilloylglycineCOC1=C(O)C=CC(=C1)C(O)=NCC(O)=O2106.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Vanilloylglycine,1TMS,isomer #1COC1=CC(C(O)=NCC(=O)O)=CC=C1O[Si](C)(C)C2213.6Semi standard non polar33892256
Vanilloylglycine,1TMS,isomer #2COC1=CC(C(=NCC(=O)O)O[Si](C)(C)C)=CC=C1O2142.9Semi standard non polar33892256
Vanilloylglycine,1TMS,isomer #3COC1=CC(C(O)=NCC(=O)O[Si](C)(C)C)=CC=C1O2221.6Semi standard non polar33892256
Vanilloylglycine,2TMS,isomer #1COC1=CC(C(=NCC(=O)O)O[Si](C)(C)C)=CC=C1O[Si](C)(C)C2132.7Semi standard non polar33892256
Vanilloylglycine,2TMS,isomer #2COC1=CC(C(O)=NCC(=O)O[Si](C)(C)C)=CC=C1O[Si](C)(C)C2221.4Semi standard non polar33892256
Vanilloylglycine,2TMS,isomer #3COC1=CC(C(=NCC(=O)O[Si](C)(C)C)O[Si](C)(C)C)=CC=C1O2169.4Semi standard non polar33892256
Vanilloylglycine,3TMS,isomer #1COC1=CC(C(=NCC(=O)O[Si](C)(C)C)O[Si](C)(C)C)=CC=C1O[Si](C)(C)C2227.3Semi standard non polar33892256
Vanilloylglycine,1TBDMS,isomer #1COC1=CC(C(O)=NCC(=O)O)=CC=C1O[Si](C)(C)C(C)(C)C2499.9Semi standard non polar33892256
Vanilloylglycine,1TBDMS,isomer #2COC1=CC(C(=NCC(=O)O)O[Si](C)(C)C(C)(C)C)=CC=C1O2429.6Semi standard non polar33892256
Vanilloylglycine,1TBDMS,isomer #3COC1=CC(C(O)=NCC(=O)O[Si](C)(C)C(C)(C)C)=CC=C1O2477.1Semi standard non polar33892256
Vanilloylglycine,2TBDMS,isomer #1COC1=CC(C(=NCC(=O)O)O[Si](C)(C)C(C)(C)C)=CC=C1O[Si](C)(C)C(C)(C)C2662.0Semi standard non polar33892256
Vanilloylglycine,2TBDMS,isomer #2COC1=CC(C(O)=NCC(=O)O[Si](C)(C)C(C)(C)C)=CC=C1O[Si](C)(C)C(C)(C)C2724.0Semi standard non polar33892256
Vanilloylglycine,2TBDMS,isomer #3COC1=CC(C(=NCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)=CC=C1O2659.5Semi standard non polar33892256
Vanilloylglycine,3TBDMS,isomer #1COC1=CC(C(=NCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)=CC=C1O[Si](C)(C)C(C)(C)C2883.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Vanilloylglycine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0udi-1910000000-bb66a7ca5718ab36a3c62017-07-27Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Vanilloylglycine GC-MS (3 TMS) - 70eV, Positivesplash10-00b9-9026400000-fb5a1bad52a62ba591842017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Vanilloylglycine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Vanilloylglycine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 10V, Positive-QTOFsplash10-004i-3490000000-a9300847707f92a0a0742017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 20V, Positive-QTOFsplash10-0un9-4920000000-be775c57516238d77dd62017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 40V, Positive-QTOFsplash10-0fmi-9700000000-3bb122542849083399742017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 10V, Negative-QTOFsplash10-00di-0290000000-4f92f07a3a935f792f5a2017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 20V, Negative-QTOFsplash10-00di-1970000000-70968ac99b79604070dd2017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 40V, Negative-QTOFsplash10-05fr-9800000000-302c7f6e7555688d77c72017-06-28Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 10V, Positive-QTOFsplash10-0kdi-0970000000-73f4470a80941d26574b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 20V, Positive-QTOFsplash10-053r-3910000000-860d07b68446c2120eaa2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 40V, Positive-QTOFsplash10-0umi-9800000000-afa10b712333fc9202972021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 10V, Negative-QTOFsplash10-0089-0940000000-5506c039f861fe3063fe2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 20V, Negative-QTOFsplash10-0bt9-1900000000-d1874abfc4291bca43dc2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilloylglycine 40V, Negative-QTOFsplash10-05fr-6930000000-1ae7df8bd7e19e565a752021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)MaleNormal details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)Both
Normal
details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedAdult (>18 years old)BothAsthma details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB030006
KNApSAcK IDNot Available
Chemspider ID2340857
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia Link3-Methoxy-4-hydroxyhippuric acid
METLIN IDNot Available
PubChem Compound3083688
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. van der Hooft JJ, de Vos RC, Mihaleva V, Bino RJ, Ridder L, de Roo N, Jacobs DM, van Duynhoven JP, Vervoort J: Structural elucidation and quantification of phenolic conjugates present in human urine after tea intake. Anal Chem. 2012 Aug 21;84(16):7263-71. doi: 10.1021/ac3017339. Epub 2012 Aug 2. [PubMed:22827565 ]