| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2012-09-12 03:34:36 UTC |
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| Update Date | 2022-03-07 02:57:07 UTC |
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| HMDB ID | HMDB0041658 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | 3'-Hydroxygenistein |
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| Description | 3'-Hydroxygenistein, also known as isoluteolin or norsantal, belongs to the class of organic compounds known as isoflavones. These are polycyclic compounds containing a 2-isoflavene skeleton which bears a ketone group at the C4 carbon atom. Thus, 3'-hydroxygenistein is considered to be a flavonoid. 3'-Hydroxygenistein is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Based on a literature review a significant number of articles have been published on 3'-Hydroxygenistein. |
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| Structure | OC1=CC2=C(C(O)=C1)C(=O)C(=CO2)C1=CC=C(O)C(O)=C1 InChI=1S/C15H10O6/c16-8-4-12(19)14-13(5-8)21-6-9(15(14)20)7-1-2-10(17)11(18)3-7/h1-6,16-19H |
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| Synonyms | | Value | Source |
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| 3',4',5,7-Tetrahydroxyisoflavone | ChEBI | | 5,7-Dihydroxy-3-(3,4-dihydroxyphenyl)-4-1H-benzopyran-4-one | ChEBI | | Isoluteolin | ChEBI | | Norsantal | ChEBI | | Santol | ChEBI | | 3-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-4H-1-benzopyran-4-one | HMDB | | 3'-Hydroxygenistein | ChEBI |
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| Chemical Formula | C15H10O6 |
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| Average Molecular Weight | 286.2363 |
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| Monoisotopic Molecular Weight | 286.047738052 |
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| IUPAC Name | 3-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one |
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| Traditional Name | quercitin |
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| CAS Registry Number | Not Available |
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| SMILES | OC1=CC2=C(C(O)=C1)C(=O)C(=CO2)C1=CC=C(O)C(O)=C1 |
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| InChI Identifier | InChI=1S/C15H10O6/c16-8-4-12(19)14-13(5-8)21-6-9(15(14)20)7-1-2-10(17)11(18)3-7/h1-6,16-19H |
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| InChI Key | IOYHCQBYQJQBSK-UHFFFAOYSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as isoflavones. These are polycyclic compounds containing a 2-isoflavene skeleton which bears a ketone group at the C4 carbon atom. |
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| Kingdom | Organic compounds |
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| Super Class | Phenylpropanoids and polyketides |
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| Class | Isoflavonoids |
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| Sub Class | Isoflav-2-enes |
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| Direct Parent | Isoflavones |
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| Alternative Parents | |
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| Substituents | - Hydroxyisoflavonoid
- Isoflavone
- Chromone
- Benzopyran
- 1-benzopyran
- Catechol
- 1-hydroxy-4-unsubstituted benzenoid
- 1-hydroxy-2-unsubstituted benzenoid
- Phenol
- Pyranone
- Monocyclic benzene moiety
- Pyran
- Benzenoid
- Heteroaromatic compound
- Vinylogous acid
- Organoheterocyclic compound
- Oxacycle
- Organooxygen compound
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 5.63 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 11.1946 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.73 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 31.6 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 1848.0 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 278.1 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 109.5 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 160.0 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 377.9 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 528.1 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 487.8 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 138.0 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 775.2 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 339.3 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1380.9 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 294.3 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 346.3 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 510.7 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 237.7 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 227.1 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| 3'-Hydroxygenistein,1TMS,isomer #1 | C[Si](C)(C)OC1=CC(O)=C2C(=O)C(C3=CC=C(O)C(O)=C3)=COC2=C1 | 3243.6 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,1TMS,isomer #2 | C[Si](C)(C)OC1=CC(O)=CC2=C1C(=O)C(C1=CC=C(O)C(O)=C1)=CO2 | 3192.3 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,1TMS,isomer #3 | C[Si](C)(C)OC1=CC=C(C2=COC3=CC(O)=CC(O)=C3C2=O)C=C1O | 3244.4 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,1TMS,isomer #4 | C[Si](C)(C)OC1=CC(C2=COC3=CC(O)=CC(O)=C3C2=O)=CC=C1O | 3237.1 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TMS,isomer #1 | C[Si](C)(C)OC1=CC(O[Si](C)(C)C)=C2C(=O)C(C3=CC=C(O)C(O)=C3)=COC2=C1 | 3099.1 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TMS,isomer #2 | C[Si](C)(C)OC1=CC(O)=C2C(=O)C(C3=CC=C(O[Si](C)(C)C)C(O)=C3)=COC2=C1 | 3152.0 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TMS,isomer #3 | C[Si](C)(C)OC1=CC(O)=C2C(=O)C(C3=CC=C(O)C(O[Si](C)(C)C)=C3)=COC2=C1 | 3115.0 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TMS,isomer #4 | C[Si](C)(C)OC1=CC=C(C2=COC3=CC(O)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O | 3084.5 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TMS,isomer #5 | C[Si](C)(C)OC1=CC(C2=COC3=CC(O)=CC(O[Si](C)(C)C)=C3C2=O)=CC=C1O | 3057.9 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TMS,isomer #6 | C[Si](C)(C)OC1=CC=C(C2=COC3=CC(O)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C | 3041.0 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,3TMS,isomer #1 | C[Si](C)(C)OC1=CC(O[Si](C)(C)C)=C2C(=O)C(C3=CC=C(O[Si](C)(C)C)C(O)=C3)=COC2=C1 | 3050.7 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,3TMS,isomer #2 | C[Si](C)(C)OC1=CC(O[Si](C)(C)C)=C2C(=O)C(C3=CC=C(O)C(O[Si](C)(C)C)=C3)=COC2=C1 | 3017.4 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,3TMS,isomer #3 | C[Si](C)(C)OC1=CC(O)=C2C(=O)C(C3=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C3)=COC2=C1 | 2995.6 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,3TMS,isomer #4 | C[Si](C)(C)OC1=CC=C(C2=COC3=CC(O)=CC(O[Si](C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C | 2954.9 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,4TMS,isomer #1 | C[Si](C)(C)OC1=CC(O[Si](C)(C)C)=C2C(=O)C(C3=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C3)=COC2=C1 | 3002.7 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC1=CC(O)=C2C(=O)C(C3=CC=C(O)C(O)=C3)=COC2=C1 | 3515.2 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC1=CC(O)=CC2=C1C(=O)C(C1=CC=C(O)C(O)=C1)=CO2 | 3458.6 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC1=CC=C(C2=COC3=CC(O)=CC(O)=C3C2=O)C=C1O | 3521.7 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,1TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)OC1=CC(C2=COC3=CC(O)=CC(O)=C3C2=O)=CC=C1O | 3496.9 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC1=CC(O[Si](C)(C)C(C)(C)C)=C2C(=O)C(C3=CC=C(O)C(O)=C3)=COC2=C1 | 3693.7 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC1=CC(O)=C2C(=O)C(C3=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C3)=COC2=C1 | 3728.9 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC1=CC(O)=C2C(=O)C(C3=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C3)=COC2=C1 | 3691.7 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)OC1=CC=C(C2=COC3=CC(O)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O | 3685.7 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TBDMS,isomer #5 | CC(C)(C)[Si](C)(C)OC1=CC(C2=COC3=CC(O)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)=CC=C1O | 3651.3 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,2TBDMS,isomer #6 | CC(C)(C)[Si](C)(C)OC1=CC=C(C2=COC3=CC(O)=CC(O)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C | 3679.8 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC1=CC(O[Si](C)(C)C(C)(C)C)=C2C(=O)C(C3=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C3)=COC2=C1 | 3827.5 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,3TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC1=CC(O[Si](C)(C)C(C)(C)C)=C2C(=O)C(C3=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C3)=COC2=C1 | 3801.1 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,3TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC1=CC(O)=C2C(=O)C(C3=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C3)=COC2=C1 | 3785.7 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,3TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)OC1=CC=C(C2=COC3=CC(O)=CC(O[Si](C)(C)C(C)(C)C)=C3C2=O)C=C1O[Si](C)(C)C(C)(C)C | 3736.7 | Semi standard non polar | 33892256 | | 3'-Hydroxygenistein,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC1=CC(O[Si](C)(C)C(C)(C)C)=C2C(=O)C(C3=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C3)=COC2=C1 | 3920.1 | Semi standard non polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - 3'-Hydroxygenistein GC-MS (Non-derivatized) - 70eV, Positive | splash10-0a4i-0390000000-360652882f44b694b8a2 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3'-Hydroxygenistein GC-MS (4 TMS) - 70eV, Positive | splash10-0zmj-1050090000-909e736154fd67b61eee | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3'-Hydroxygenistein GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 10V, Positive-QTOF | splash10-000i-0090000000-d8988c733e9e4df4bfba | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 20V, Positive-QTOF | splash10-052r-0190000000-347483b589c525c2fcdd | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 40V, Positive-QTOF | splash10-0561-8970000000-3d0b46ec82c93f615c73 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 10V, Negative-QTOF | splash10-000i-0090000000-9f7fc9fd5ad08a4e2ad9 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 20V, Negative-QTOF | splash10-000i-0290000000-459546584a2daa02d9ac | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 40V, Negative-QTOF | splash10-0ar0-0890000000-05cce6d7cfefddb81454 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 10V, Positive-QTOF | splash10-000i-0090000000-ad6070afb384abda8f3b | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 20V, Positive-QTOF | splash10-000i-0090000000-f1461cca4e9ac5b2e7f4 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 40V, Positive-QTOF | splash10-004j-0490000000-3ed95cff32fb341dc501 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 10V, Negative-QTOF | splash10-000i-0090000000-3713e1ac18e8a67ad454 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 20V, Negative-QTOF | splash10-000i-0090000000-ed604628cd07f974a5b6 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3'-Hydroxygenistein 40V, Negative-QTOF | splash10-0udi-1090000000-c3721d2c48ba328d8a20 | 2021-09-22 | Wishart Lab | View Spectrum |
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| General References | - Neveu V, Perez-Jimenez J, Vos F, Crespy V, du Chaffaut L, Mennen L, Knox C, Eisner R, Cruz J, Wishart D, Scalbert A: Phenol-Explorer: an online comprehensive database on polyphenol contents in foods. Database (Oxford). 2010;2010:bap024. doi: 10.1093/database/bap024. Epub 2010 Jan 8. [PubMed:20428313 ]
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