Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:54:18 UTC
Update Date2022-03-07 02:53:37 UTC
HMDB IDHMDB0033192
Secondary Accession Numbers
  • HMDB33192
Metabolite Identification
Common NameNeoacrimarine K
DescriptionNeoacrimarine K belongs to the class of organic compounds known as acridones. These are acridines containing a ketone group attached to the C9 carbon atom of the acridine moiety. Neoacrimarine K has been detected, but not quantified in, citrus. This could make neoacrimarine K a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Neoacrimarine K.
Structure
Data?1563862366
Synonyms
ValueSource
Neoacrimarine-KHMDB
Chemical FormulaC31H29NO9
Average Molecular Weight559.5633
Monoisotopic Molecular Weight559.184231531
IUPAC Name1-hydroxy-4-[8-(2-hydroxypropan-2-yl)-2-oxo-2H,8H,9H-furo[2,3-h]chromen-9-yl]-3,5,6-trimethoxy-10-methyl-9,10-dihydroacridin-9-one
Traditional Name1-hydroxy-4-[8-(2-hydroxypropan-2-yl)-2-oxo-8H,9H-furo[2,3-h]chromen-9-yl]-3,5,6-trimethoxy-10-methylacridin-9-one
CAS Registry Number217199-09-2
SMILES
COC1=C(OC)C2=C(C=C1)C(=O)C1=C(N2C)C(C2C(OC3=C2C2=C(C=C3)C=CC(=O)O2)C(C)(C)O)=C(OC)C=C1O
InChI Identifier
InChI=1S/C31H29NO9/c1-31(2,36)30-24(23-17(40-30)10-7-14-8-12-20(34)41-28(14)23)22-19(38-5)13-16(33)21-26(22)32(3)25-15(27(21)35)9-11-18(37-4)29(25)39-6/h7-13,24,30,33,36H,1-6H3
InChI KeyXRRKNHPPSZSNHE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as acridones. These are acridines containing a ketone group attached to the C9 carbon atom of the acridine moiety.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassQuinolines and derivatives
Sub ClassBenzoquinolines
Direct ParentAcridones
Alternative Parents
Substituents
  • Acridone
  • Angular furanocoumarin
  • Furanocoumarin
  • Dihydroquinolone
  • Coumarin
  • Benzopyran
  • Dihydroquinoline
  • 1-benzopyran
  • Coumaran
  • Anisole
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Pyranone
  • Pyran
  • Pyridine
  • Benzenoid
  • Vinylogous acid
  • Heteroaromatic compound
  • Tertiary alcohol
  • Vinylogous amide
  • Lactone
  • Oxacycle
  • Ether
  • Azacycle
  • Alcohol
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.014 g/LALOGPS
logP3.95ALOGPS
logP4.25ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)10.05ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area123.99 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity150.18 m³·mol⁻¹ChemAxon
Polarizability57.02 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+226.69631661259
DarkChem[M-H]-225.65531661259
DeepCCS[M+H]+223.48930932474
DeepCCS[M-H]-221.59530932474
DeepCCS[M-2H]-254.83530932474
DeepCCS[M+Na]+229.12230932474
AllCCS[M+H]+230.232859911
AllCCS[M+H-H2O]+228.332859911
AllCCS[M+NH4]+231.932859911
AllCCS[M+Na]+232.332859911
AllCCS[M-H]-234.632859911
AllCCS[M+Na-2H]-236.032859911
AllCCS[M+HCOO]-237.732859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.7.11 minutes32390414
Predicted by Siyang on May 30, 202212.805 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.71 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid41.6 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2782.1 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid201.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid199.3 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid176.2 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid91.3 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid627.6 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid578.8 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)167.7 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid956.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid490.9 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1560.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid392.1 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid360.4 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate258.7 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA326.5 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water9.6 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Neoacrimarine KCOC1=C(OC)C2=C(C=C1)C(=O)C1=C(N2C)C(C2C(OC3=C2C2=C(C=C3)C=CC(=O)O2)C(C)(C)O)=C(OC)C=C1O5847.1Standard polar33892256
Neoacrimarine KCOC1=C(OC)C2=C(C=C1)C(=O)C1=C(N2C)C(C2C(OC3=C2C2=C(C=C3)C=CC(=O)O2)C(C)(C)O)=C(OC)C=C1O4125.1Standard non polar33892256
Neoacrimarine KCOC1=C(OC)C2=C(C=C1)C(=O)C1=C(N2C)C(C2C(OC3=C2C2=C(C=C3)C=CC(=O)O2)C(C)(C)O)=C(OC)C=C1O4819.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Neoacrimarine K,1TMS,isomer #1COC1=CC=C2C(=O)C3=C(O)C=C(OC)C(C4C5=C6OC(=O)C=CC6=CC=C5OC4C(C)(C)O[Si](C)(C)C)=C3N(C)C2=C1OC4791.9Semi standard non polar33892256
Neoacrimarine K,1TMS,isomer #2COC1=CC=C2C(=O)C3=C(O[Si](C)(C)C)C=C(OC)C(C4C5=C6OC(=O)C=CC6=CC=C5OC4C(C)(C)O)=C3N(C)C2=C1OC4830.7Semi standard non polar33892256
Neoacrimarine K,2TMS,isomer #1COC1=CC=C2C(=O)C3=C(O[Si](C)(C)C)C=C(OC)C(C4C5=C6OC(=O)C=CC6=CC=C5OC4C(C)(C)O[Si](C)(C)C)=C3N(C)C2=C1OC4749.3Semi standard non polar33892256
Neoacrimarine K,1TBDMS,isomer #1COC1=CC=C2C(=O)C3=C(O)C=C(OC)C(C4C5=C6OC(=O)C=CC6=CC=C5OC4C(C)(C)O[Si](C)(C)C(C)(C)C)=C3N(C)C2=C1OC4989.4Semi standard non polar33892256
Neoacrimarine K,1TBDMS,isomer #2COC1=CC=C2C(=O)C3=C(O[Si](C)(C)C(C)(C)C)C=C(OC)C(C4C5=C6OC(=O)C=CC6=CC=C5OC4C(C)(C)O)=C3N(C)C2=C1OC5032.0Semi standard non polar33892256
Neoacrimarine K,2TBDMS,isomer #1COC1=CC=C2C(=O)C3=C(O[Si](C)(C)C(C)(C)C)C=C(OC)C(C4C5=C6OC(=O)C=CC6=CC=C5OC4C(C)(C)O[Si](C)(C)C(C)(C)C)=C3N(C)C2=C1OC5147.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Neoacrimarine K GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a4l-3000190000-7c315f7a51c6dadd919e2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Neoacrimarine K GC-MS (1 TMS) - 70eV, Positivesplash10-0g4r-9200068000-9b5a3b6e5371ee62c1942017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Neoacrimarine K GC-MS ("Neoacrimarine K,1TMS,#1" TMS) - 70eV, PositiveNot Available2021-10-14Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Neoacrimarine K GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Neoacrimarine K GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Neoacrimarine K GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Neoacrimarine K GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Neoacrimarine K GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 10V, Positive-QTOFsplash10-03dl-0000090000-07dcfcb3297f82e2bd992016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 20V, Positive-QTOFsplash10-03dl-0000190000-75622e8e1c47f14cf8fd2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 40V, Positive-QTOFsplash10-0a4r-0000930000-e5d974dfcaba6ccfba572016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 10V, Negative-QTOFsplash10-0a4i-0000090000-732a4f6b10acfec6946c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 20V, Negative-QTOFsplash10-03ec-0013290000-00eb6b739e5f6e0836402016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 40V, Negative-QTOFsplash10-03fr-1241940000-c30d0192704fe3a343762016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 10V, Positive-QTOFsplash10-03di-0000090000-637fc87ac87154e67df12021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 20V, Positive-QTOFsplash10-03di-0001090000-2a61c0e88ab3320eacc32021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 40V, Positive-QTOFsplash10-0a4i-6001960000-48f7f8a37f98095453f12021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 10V, Negative-QTOFsplash10-0a4i-0000090000-c4b818f25f1d717ef4dc2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 20V, Negative-QTOFsplash10-0a4l-0000090000-61d094e975eff6a763a72021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Neoacrimarine K 40V, Negative-QTOFsplash10-05gi-0000950000-31a703bad9f695287bd92021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011204
KNApSAcK IDC00024266
Chemspider ID8802023
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10626660
PDB IDNot Available
ChEBI ID169203
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Enzymes

General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
Neoacrimarine K → 3,4,5-trihydroxy-6-({4-[8-(2-hydroxypropan-2-yl)-2-oxo-2H,8H,9H-furo[2,3-h]chromen-9-yl]-3,5,6-trimethoxy-10-methyl-9-oxo-9,10-dihydroacridin-1-yl}oxy)oxane-2-carboxylic aciddetails