| Record Information |
|---|
| Version | 5.0 |
|---|
| Status | Detected but not Quantified |
|---|
| Creation Date | 2012-09-11 17:43:47 UTC |
|---|
| Update Date | 2022-03-07 02:53:00 UTC |
|---|
| HMDB ID | HMDB0031518 |
|---|
| Secondary Accession Numbers | |
|---|
| Metabolite Identification |
|---|
| Common Name | D-Malic acid |
|---|
| Description | D-Malic acid, also known as D-malate, belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom. D-Malic acid exists in all living organisms, ranging from bacteria to humans. D-Malic acid is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review a significant number of articles have been published on D-Malic acid. |
|---|
| Structure | InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/t2-/m1/s1 |
|---|
| Synonyms | | Value | Source |
|---|
| (+)-D-Malic acid | ChEBI | | (R)-2-Hydroxybutanedioic acid | ChEBI | | 2-HYDROXY-succinIC ACID | ChEBI | | D-Malate | Kegg | | (+)-D-Malate | Generator | | (R)-2-Hydroxybutanedioate | Generator | | 2-HYDROXY-succinate | Generator | | (R)-Malate | HMDB | | (R)-Hydroxybutanedioic acid | HMDB | | D-(+)-Malic acid | HMDB | | D-Hydroxybutanedioic acid | HMDB | | Hydroxy-(R)-butanedioic acid | HMDB | | R-Malic acid | HMDB | | D-Malic acid | ChEBI |
|
|---|
| Chemical Formula | C4H6O5 |
|---|
| Average Molecular Weight | 134.0874 |
|---|
| Monoisotopic Molecular Weight | 134.021523302 |
|---|
| IUPAC Name | (2R)-2-hydroxybutanedioic acid |
|---|
| Traditional Name | .+-.-malic acid |
|---|
| CAS Registry Number | 636-61-3 |
|---|
| SMILES | O[C@H](CC(O)=O)C(O)=O |
|---|
| InChI Identifier | InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/t2-/m1/s1 |
|---|
| InChI Key | BJEPYKJPYRNKOW-UWTATZPHSA-N |
|---|
| Chemical Taxonomy |
|---|
| Description | Belongs to the class of organic compounds known as beta hydroxy acids and derivatives. Beta hydroxy acids and derivatives are compounds containing a carboxylic acid substituted with a hydroxyl group on the C3 carbon atom. |
|---|
| Kingdom | Organic compounds |
|---|
| Super Class | Organic acids and derivatives |
|---|
| Class | Hydroxy acids and derivatives |
|---|
| Sub Class | Beta hydroxy acids and derivatives |
|---|
| Direct Parent | Beta hydroxy acids and derivatives |
|---|
| Alternative Parents | |
|---|
| Substituents | - Short-chain hydroxy acid
- Beta-hydroxy acid
- Fatty acid
- Dicarboxylic acid or derivatives
- Alpha-hydroxy acid
- Secondary alcohol
- Carboxylic acid
- Carboxylic acid derivative
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Carbonyl group
- Alcohol
- Aliphatic acyclic compound
|
|---|
| Molecular Framework | Aliphatic acyclic compounds |
|---|
| External Descriptors | |
|---|
| Ontology |
|---|
| Not Available | Not Available |
|---|
| Physical Properties |
|---|
| State | Solid |
|---|
| Experimental Molecular Properties | | Property | Value | Reference |
|---|
| Melting Point | 101 °C | Not Available | | Boiling Point | 306.00 to 307.00 °C. @ 760.00 mm Hg (est) | The Good Scents Company Information System | | Water Solubility | 364 mg/mL at 20 °C | Not Available | | LogP | -1.26 | Not Available |
|
|---|
| Experimental Chromatographic Properties | Experimental Collision Cross Sections |
|---|
| Predicted Molecular Properties | |
|---|
| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
|---|
| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 1.06 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 9.619 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 5.66 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 307.2 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 708.2 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 364.2 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 46.7 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 233.7 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 86.3 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 278.3 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 249.7 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 578.4 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 609.1 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 55.1 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 830.5 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 226.3 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 294.2 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 780.7 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 308.4 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 459.4 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
|---|
| D-Malic acid,1TMS,isomer #1 | C[Si](C)(C)O[C@H](CC(=O)O)C(=O)O | 1317.5 | Semi standard non polar | 33892256 | | D-Malic acid,1TMS,isomer #2 | C[Si](C)(C)OC(=O)C[C@@H](O)C(=O)O | 1311.4 | Semi standard non polar | 33892256 | | D-Malic acid,1TMS,isomer #3 | C[Si](C)(C)OC(=O)[C@H](O)CC(=O)O | 1279.0 | Semi standard non polar | 33892256 | | D-Malic acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C[C@@H](O[Si](C)(C)C)C(=O)O | 1404.0 | Semi standard non polar | 33892256 | | D-Malic acid,2TMS,isomer #2 | C[Si](C)(C)OC(=O)[C@@H](CC(=O)O)O[Si](C)(C)C | 1376.6 | Semi standard non polar | 33892256 | | D-Malic acid,2TMS,isomer #3 | C[Si](C)(C)OC(=O)C[C@@H](O)C(=O)O[Si](C)(C)C | 1382.5 | Semi standard non polar | 33892256 | | D-Malic acid,3TMS,isomer #1 | C[Si](C)(C)OC(=O)C[C@@H](O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1498.5 | Semi standard non polar | 33892256 | | D-Malic acid,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)O[C@H](CC(=O)O)C(=O)O | 1572.3 | Semi standard non polar | 33892256 | | D-Malic acid,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](O)C(=O)O | 1571.3 | Semi standard non polar | 33892256 | | D-Malic acid,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)[C@H](O)CC(=O)O | 1555.1 | Semi standard non polar | 33892256 | | D-Malic acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](O[Si](C)(C)C(C)(C)C)C(=O)O | 1851.7 | Semi standard non polar | 33892256 | | D-Malic acid,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)[C@@H](CC(=O)O)O[Si](C)(C)C(C)(C)C | 1836.9 | Semi standard non polar | 33892256 | | D-Malic acid,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](O)C(=O)O[Si](C)(C)C(C)(C)C | 1825.4 | Semi standard non polar | 33892256 | | D-Malic acid,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 2116.5 | Semi standard non polar | 33892256 |
|
|---|
| Spectra |
|---|
| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
|---|
| Experimental GC-MS | GC-MS Spectrum - D-Malic acid GC-EI-TOF (Non-derivatized) | splash10-0002-0930000000-53a536e3bc82b8e91612 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | | Experimental GC-MS | GC-MS Spectrum - D-Malic acid GC-EI-TOF (Non-derivatized) | splash10-00di-9610000000-883e07f52319a029b9f9 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | | Experimental GC-MS | GC-MS Spectrum - D-Malic acid GC-EI-TOF (Non-derivatized) | splash10-0002-0930000000-53a536e3bc82b8e91612 | 2018-05-18 | HMDB team, MONA, MassBank | View Spectrum | | Experimental GC-MS | GC-MS Spectrum - D-Malic acid GC-EI-TOF (Non-derivatized) | splash10-00di-9610000000-883e07f52319a029b9f9 | 2018-05-18 | HMDB team, MONA, MassBank | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - D-Malic acid GC-MS (Non-derivatized) - 70eV, Positive | splash10-0006-9100000000-add08efe51cfe6d9243c | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - D-Malic acid GC-MS (3 TMS) - 70eV, Positive | splash10-02j9-7191000000-b78c78194b39deee0ca4 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - D-Malic acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
|---|
| Experimental LC-MS/MS | LC-MS/MS Spectrum - D-Malic acid LC-ESI-QTOF , negative-QTOF | splash10-0159-3900000000-b601107a03ca7060bc56 | 2017-09-14 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - D-Malic acid 10V, Negative-QTOF | splash10-01b9-7900000000-7e16d13cd13953520b72 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - D-Malic acid 20V, Negative-QTOF | splash10-00di-9000000000-ed4a8a4776b51e62327c | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - D-Malic acid 40V, Negative-QTOF | splash10-0006-9000000000-22c9ebc50090b4cd6671 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 10V, Positive-QTOF | splash10-014i-6900000000-3b7d14a7ed7bb42627e4 | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 20V, Positive-QTOF | splash10-01bj-9300000000-20f68e610aeba32d1947 | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 40V, Positive-QTOF | splash10-00dl-9000000000-044292489a383c81ae1d | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 10V, Negative-QTOF | splash10-00m0-8900000000-9da4062d3c439ed2f7eb | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 20V, Negative-QTOF | splash10-00ri-9200000000-c4d019ab4961e5b1a1ae | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 40V, Negative-QTOF | splash10-05fu-9000000000-bc073c2d0e1a2f8a82e3 | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 10V, Negative-QTOF | splash10-00y0-9400000000-b346287170f4b47937d9 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 20V, Negative-QTOF | splash10-00du-9000000000-94fcc5032bed94eae77e | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 40V, Negative-QTOF | splash10-052f-9000000000-43c40f8a7715a996c55b | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 10V, Positive-QTOF | splash10-00ri-9400000000-a20ca040dba0bb25ae2b | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 20V, Positive-QTOF | splash10-0095-9000000000-90064952bc6def150ecc | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - D-Malic acid 40V, Positive-QTOF | splash10-0006-9000000000-4dd1a07ea5d3aab2c6ea | 2021-09-23 | Wishart Lab | View Spectrum |
NMR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
|---|
| Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum |
|
|---|
| Biological Properties |
|---|
| Cellular Locations | |
|---|
| Biospecimen Locations | |
|---|
| Tissue Locations | Not Available |
|---|
| Pathways | |
|---|
| Normal Concentrations |
|---|
| |
| Feces | Detected but not Quantified | Not Quantified | Adult (>18 years old) | Both | Normal | | details | | Feces | Detected but not Quantified | Not Quantified | Adult (>18 years old) | Both | Normal | | details | | Feces | Detected but not Quantified | Not Quantified | Adult (>18 years old) | Both | Normal | | details | | Feces | Detected but not Quantified | Not Quantified | Adult (>18 years old) | Both | Normal | | details |
|
|---|
| Abnormal Concentrations |
|---|
| |
| Feces | Detected but not Quantified | Not Quantified | Adult (>18 years old) | Both | Colorectal cancer | | details | | Feces | Detected but not Quantified | Not Quantified | Adult (>18 years old) | Both | Colorectal cancer | | details |
|
|---|
| Associated Disorders and Diseases |
|---|
| Disease References | | Colorectal cancer |
|---|
- Sinha R, Ahn J, Sampson JN, Shi J, Yu G, Xiong X, Hayes RB, Goedert JJ: Fecal Microbiota, Fecal Metabolome, and Colorectal Cancer Interrelations. PLoS One. 2016 Mar 25;11(3):e0152126. doi: 10.1371/journal.pone.0152126. eCollection 2016. [PubMed:27015276 ]
- Goedert JJ, Sampson JN, Moore SC, Xiao Q, Xiong X, Hayes RB, Ahn J, Shi J, Sinha R: Fecal metabolomics: assay performance and association with colorectal cancer. Carcinogenesis. 2014 Sep;35(9):2089-96. doi: 10.1093/carcin/bgu131. Epub 2014 Jul 18. [PubMed:25037050 ]
|
|
|---|
| Associated OMIM IDs | |
|---|
| External Links |
|---|
| DrugBank ID | DB03499 |
|---|
| Phenol Explorer Compound ID | Not Available |
|---|
| FooDB ID | FDB008115 |
|---|
| KNApSAcK ID | Not Available |
|---|
| Chemspider ID | 83793 |
|---|
| KEGG Compound ID | C00497 |
|---|
| BioCyc ID | CPD-660 |
|---|
| BiGG ID | Not Available |
|---|
| Wikipedia Link | Malic_acid |
|---|
| METLIN ID | Not Available |
|---|
| PubChem Compound | 92824 |
|---|
| PDB ID | DMR |
|---|
| ChEBI ID | 30796 |
|---|
| Food Biomarker Ontology | Not Available |
|---|
| VMH ID | MAL_D |
|---|
| MarkerDB ID | Not Available |
|---|
| Good Scents ID | rw1107901 |
|---|
| References |
|---|
| Synthesis Reference | Not Available |
|---|
| Material Safety Data Sheet (MSDS) | Not Available |
|---|
| General References | - Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
- Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
- Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
- Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
- (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
- Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
|
|---|