Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:39:00 UTC
Update Date2022-03-07 02:52:41 UTC
HMDB IDHMDB0030784
Secondary Accession Numbers
  • HMDB30784
Metabolite Identification
Common NameNormammein
DescriptionNormammein, also known as mammea b/bc, belongs to the class of organic compounds known as 7-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to the C7 position the coumarin skeleton. Based on a literature review very few articles have been published on Normammein.
Structure
Data?1563862037
Synonyms
ValueSource
5,7-Dihydroxy-6-(3-methyl-2-butenyl)-8-(1-oxobutyl)-4-propyl-2H-1-benzopyran-2-one, 9ciHMDB
8-Butyryl-5,7-dihydroxy-6-(3-methyl-2-butenyl)-4-propylcoumarin, 8ciHMDB
Mammea b/bcHMDB
Chemical FormulaC21H26O5
Average Molecular Weight358.4281
Monoisotopic Molecular Weight358.178023942
IUPAC Name8-butanoyl-5,7-dihydroxy-6-(3-methylbut-2-en-1-yl)-4-propyl-2H-chromen-2-one
Traditional Name8-butanoyl-5,7-dihydroxy-6-(3-methylbut-2-en-1-yl)-4-propylchromen-2-one
CAS Registry Number5085-54-1
SMILES
CCCC(=O)C1=C(O)C(CC=C(C)C)=C(O)C2=C1OC(=O)C=C2CCC
InChI Identifier
InChI=1S/C21H26O5/c1-5-7-13-11-16(23)26-21-17(13)19(24)14(10-9-12(3)4)20(25)18(21)15(22)8-6-2/h9,11,24-25H,5-8,10H2,1-4H3
InChI KeyKXLBWJRELYDBOS-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 7-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to the C7 position the coumarin skeleton.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassCoumarins and derivatives
Sub ClassHydroxycoumarins
Direct Parent7-hydroxycoumarins
Alternative Parents
Substituents
  • 7-hydroxycoumarin
  • Butyrophenone
  • Benzopyran
  • 1-benzopyran
  • Aryl alkyl ketone
  • Aryl ketone
  • Pyranone
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Vinylogous acid
  • Ketone
  • Lactone
  • Oxacycle
  • Organoheterocyclic compound
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point132 - 133 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.021 g/LALOGPS
logP4.1ALOGPS
logP5.45ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)5.89ChemAxon
pKa (Strongest Basic)-5.2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area83.83 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity102.87 m³·mol⁻¹ChemAxon
Polarizability39.76 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+186.17431661259
DarkChem[M-H]-182.28731661259
DeepCCS[M+H]+186.97330932474
DeepCCS[M-H]-184.35130932474
DeepCCS[M-2H]-218.96630932474
DeepCCS[M+Na]+194.35630932474
AllCCS[M+H]+186.532859911
AllCCS[M+H-H2O]+183.632859911
AllCCS[M+NH4]+189.132859911
AllCCS[M+Na]+189.932859911
AllCCS[M-H]-192.632859911
AllCCS[M+Na-2H]-192.932859911
AllCCS[M+HCOO]-193.532859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.9.38 minutes32390414
Predicted by Siyang on May 30, 202221.229 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20220.91 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3400.3 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid616.0 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid261.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid325.1 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid260.0 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid917.4 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1091.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)84.1 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1763.0 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid724.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid2030.8 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid586.3 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid534.1 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate355.5 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA437.3 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.1 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
NormammeinCCCC(=O)C1=C(O)C(CC=C(C)C)=C(O)C2=C1OC(=O)C=C2CCC3812.9Standard polar33892256
NormammeinCCCC(=O)C1=C(O)C(CC=C(C)C)=C(O)C2=C1OC(=O)C=C2CCC2739.5Standard non polar33892256
NormammeinCCCC(=O)C1=C(O)C(CC=C(C)C)=C(O)C2=C1OC(=O)C=C2CCC2960.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Normammein,1TMS,isomer #1CCCC(=O)C1=C(O[Si](C)(C)C)C(CC=C(C)C)=C(O)C2=C1OC(=O)C=C2CCC2750.8Semi standard non polar33892256
Normammein,1TMS,isomer #2CCCC(=O)C1=C(O)C(CC=C(C)C)=C(O[Si](C)(C)C)C2=C1OC(=O)C=C2CCC2762.9Semi standard non polar33892256
Normammein,2TMS,isomer #1CCCC(=O)C1=C(O[Si](C)(C)C)C(CC=C(C)C)=C(O[Si](C)(C)C)C2=C1OC(=O)C=C2CCC2773.1Semi standard non polar33892256
Normammein,1TBDMS,isomer #1CCCC(=O)C1=C(O[Si](C)(C)C(C)(C)C)C(CC=C(C)C)=C(O)C2=C1OC(=O)C=C2CCC2954.2Semi standard non polar33892256
Normammein,1TBDMS,isomer #2CCCC(=O)C1=C(O)C(CC=C(C)C)=C(O[Si](C)(C)C(C)(C)C)C2=C1OC(=O)C=C2CCC2968.4Semi standard non polar33892256
Normammein,2TBDMS,isomer #1CCCC(=O)C1=C(O[Si](C)(C)C(C)(C)C)C(CC=C(C)C)=C(O[Si](C)(C)C(C)(C)C)C2=C1OC(=O)C=C2CCC3183.8Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Normammein GC-MS (Non-derivatized) - 70eV, Positivesplash10-016u-2029000000-150ab09b06949886dcf02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Normammein GC-MS (2 TMS) - 70eV, Positivesplash10-000i-1000900000-a3be93d1addac624ed182017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Normammein GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 10V, Positive-QTOFsplash10-0a4i-0019000000-345e9395ee7f3ad86cd32015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 20V, Positive-QTOFsplash10-066r-5039000000-9c5e8008359c549da35d2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 40V, Positive-QTOFsplash10-0gdl-7090000000-1daadf19f4fa0f65616d2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 10V, Negative-QTOFsplash10-0a4i-0019000000-bfce9d00853b10f1d26c2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 20V, Negative-QTOFsplash10-052r-3097000000-efd7a8d5098bbd9621372015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 40V, Negative-QTOFsplash10-006x-6192000000-df7175928aa652eb5dc82015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 10V, Negative-QTOFsplash10-0a4i-0009000000-98cabe2c8373737519ac2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 20V, Negative-QTOFsplash10-0a4i-0009000000-a4df61fdfebee80bd3812021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 40V, Negative-QTOFsplash10-007p-3192000000-645d55e31c9181fdbced2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 10V, Positive-QTOFsplash10-0a4i-0019000000-ab7dee1f421b473bcff92021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 20V, Positive-QTOFsplash10-03di-0094000000-225b0d45dbca55115f122021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Normammein 40V, Positive-QTOFsplash10-03di-0090000000-9246a7e0474547c938562021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002721
KNApSAcK IDC00054347
Chemspider ID30776852
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound71438014
PDB IDNot Available
ChEBI ID174797
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Enzymes

General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
Normammein → 6-{[8-butanoyl-7-hydroxy-6-(3-methylbut-2-en-1-yl)-2-oxo-4-propyl-2H-chromen-5-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic aciddetails
Normammein → 6-{[8-butanoyl-5-hydroxy-6-(3-methylbut-2-en-1-yl)-2-oxo-4-propyl-2H-chromen-7-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic aciddetails