| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2012-09-06 15:16:50 UTC |
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| Update Date | 2022-03-07 02:51:44 UTC |
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| HMDB ID | HMDB0014792 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | Latanoprost |
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| Description | Latanoprost, also known as xalatan or phxa 41, belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Latanoprost is an extremely weak basic (essentially neutral) compound (based on its pKa). |
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| Structure | CC(C)OC(=O)CCC\C=C/C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1CC[C@@H](O)CCC1=CC=CC=C1 InChI=1S/C26H40O5/c1-19(2)31-26(30)13-9-4-3-8-12-22-23(25(29)18-24(22)28)17-16-21(27)15-14-20-10-6-5-7-11-20/h3,5-8,10-11,19,21-25,27-29H,4,9,12-18H2,1-2H3/b8-3-/t21-,22+,23+,24-,25+/m0/s1 |
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| Synonyms | | Value | Source |
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| Isopropyl (Z)-7-((1R,2R,3R,5S)-3,5-dihydroxy-2-((3R)-3-hydroxy-5-phenylpentyl)cyclopentyl)-5-heptenoate | ChEBI | | Latanoprostum | ChEBI | | PhXA 41 | ChEBI | | Propan-2-yl (5Z)-7-{(1R,2R,3R,5S)-3,5-dihydroxy-2-[(3R)-3-hydroxy-5-phenylpentyl]cyclopentyl}hept-5-enoate | ChEBI | | Xalatan | ChEBI | | Isopropyl (Z)-7-((1R,2R,3R,5S)-3,5-dihydroxy-2-((3R)-3-hydroxy-5-phenylpentyl)cyclopentyl)-5-heptenoic acid | Generator | | Propan-2-yl (5Z)-7-{(1R,2R,3R,5S)-3,5-dihydroxy-2-[(3R)-3-hydroxy-5-phenylpentyl]cyclopentyl}hept-5-enoic acid | Generator | | PHXA41 | HMDB | | Pfizer brand OF latanoprost | HMDB | | PhXA34 | HMDB |
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| Chemical Formula | C26H40O5 |
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| Average Molecular Weight | 432.5928 |
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| Monoisotopic Molecular Weight | 432.28757439 |
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| IUPAC Name | propan-2-yl (5Z)-7-[(1R,2R,3R,5S)-3,5-dihydroxy-2-[(3R)-3-hydroxy-5-phenylpentyl]cyclopentyl]hept-5-enoate |
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| Traditional Name | latanoprost |
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| CAS Registry Number | 130209-82-4 |
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| SMILES | CC(C)OC(=O)CCC\C=C/C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1CC[C@@H](O)CCC1=CC=CC=C1 |
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| InChI Identifier | InChI=1S/C26H40O5/c1-19(2)31-26(30)13-9-4-3-8-12-22-23(25(29)18-24(22)28)17-16-21(27)15-14-20-10-6-5-7-11-20/h3,5-8,10-11,19,21-25,27-29H,4,9,12-18H2,1-2H3/b8-3-/t21-,22+,23+,24-,25+/m0/s1 |
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| InChI Key | GGXICVAJURFBLW-CEYXHVGTSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Fatty Acyls |
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| Sub Class | Eicosanoids |
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| Direct Parent | Prostaglandins and related compounds |
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| Alternative Parents | |
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| Substituents | - Prostaglandin skeleton
- Fatty acid ester
- Monocyclic benzene moiety
- Cyclopentanol
- Benzenoid
- Cyclic alcohol
- Carboxylic acid ester
- Secondary alcohol
- Carboxylic acid derivative
- Monocarboxylic acid or derivatives
- Hydrocarbon derivative
- Organic oxide
- Alcohol
- Carbonyl group
- Organic oxygen compound
- Organooxygen compound
- Aromatic homomonocyclic compound
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| Molecular Framework | Aromatic homomonocyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Liquid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | 0.013 g/L | Not Available | | LogP | 4.4 | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter)). Predicted by Afia on May 17, 2022. | 8.95 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 15.6249 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 0.95 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 48.1 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 3127.3 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 212.3 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 216.7 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 176.9 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 292.6 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 749.9 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 624.2 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 83.2 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 1380.9 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 652.4 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1689.8 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 402.3 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 443.1 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 259.1 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 176.1 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 8.1 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| Latanoprost,1TMS,isomer #1 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C)C[C@@H](O)[C@@H]1CC[C@@H](O)CCC1=CC=CC=C1 | 3225.4 | Semi standard non polar | 33892256 | | Latanoprost,1TMS,isomer #2 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O)C[C@@H](O[Si](C)(C)C)[C@@H]1CC[C@@H](O)CCC1=CC=CC=C1 | 3235.7 | Semi standard non polar | 33892256 | | Latanoprost,1TMS,isomer #3 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1CC[C@H](CCC1=CC=CC=C1)O[Si](C)(C)C | 3308.4 | Semi standard non polar | 33892256 | | Latanoprost,2TMS,isomer #1 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C)C[C@@H](O[Si](C)(C)C)[C@@H]1CC[C@@H](O)CCC1=CC=CC=C1 | 3199.7 | Semi standard non polar | 33892256 | | Latanoprost,2TMS,isomer #2 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C)C[C@@H](O)[C@@H]1CC[C@H](CCC1=CC=CC=C1)O[Si](C)(C)C | 3217.2 | Semi standard non polar | 33892256 | | Latanoprost,2TMS,isomer #3 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O)C[C@@H](O[Si](C)(C)C)[C@@H]1CC[C@H](CCC1=CC=CC=C1)O[Si](C)(C)C | 3226.8 | Semi standard non polar | 33892256 | | Latanoprost,3TMS,isomer #1 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C)C[C@@H](O[Si](C)(C)C)[C@@H]1CC[C@H](CCC1=CC=CC=C1)O[Si](C)(C)C | 3211.3 | Semi standard non polar | 33892256 | | Latanoprost,1TBDMS,isomer #1 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C(C)(C)C)C[C@@H](O)[C@@H]1CC[C@@H](O)CCC1=CC=CC=C1 | 3444.5 | Semi standard non polar | 33892256 | | Latanoprost,1TBDMS,isomer #2 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O)C[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1CC[C@@H](O)CCC1=CC=CC=C1 | 3454.9 | Semi standard non polar | 33892256 | | Latanoprost,1TBDMS,isomer #3 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O)C[C@@H](O)[C@@H]1CC[C@H](CCC1=CC=CC=C1)O[Si](C)(C)C(C)(C)C | 3533.3 | Semi standard non polar | 33892256 | | Latanoprost,2TBDMS,isomer #1 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C(C)(C)C)C[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1CC[C@@H](O)CCC1=CC=CC=C1 | 3634.1 | Semi standard non polar | 33892256 | | Latanoprost,2TBDMS,isomer #2 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C(C)(C)C)C[C@@H](O)[C@@H]1CC[C@H](CCC1=CC=CC=C1)O[Si](C)(C)C(C)(C)C | 3657.9 | Semi standard non polar | 33892256 | | Latanoprost,2TBDMS,isomer #3 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O)C[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1CC[C@H](CCC1=CC=CC=C1)O[Si](C)(C)C(C)(C)C | 3672.4 | Semi standard non polar | 33892256 | | Latanoprost,3TBDMS,isomer #1 | CC(C)OC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C(C)(C)C)C[C@@H](O[Si](C)(C)C(C)(C)C)[C@@H]1CC[C@H](CCC1=CC=CC=C1)O[Si](C)(C)C(C)(C)C | 3839.4 | Semi standard non polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - Latanoprost GC-MS (Non-derivatized) - 70eV, Positive | splash10-00kf-5469500000-3070e3312e2f54422eeb | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Latanoprost GC-MS (3 TMS) - 70eV, Positive | splash10-001l-7110196000-109246e3e73496dba6fd | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Latanoprost GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Experimental LC-MS/MS | LC-MS/MS Spectrum - Latanoprost LC-ESI-qTof , Positive-QTOF | splash10-052r-1958000000-c694c9459db45a20b9af | 2017-09-14 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Latanoprost , positive-QTOF | splash10-052r-1958000000-c694c9459db45a20b9af | 2017-09-14 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Latanoprost 35V, Positive-QTOF | splash10-053i-1944000000-f34558bc420a9182b5a7 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 10V, Positive-QTOF | splash10-014j-1019700000-ea3b09b676d18f1597e8 | 2016-08-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 20V, Positive-QTOF | splash10-03di-5119100000-970c5bfecae331f19237 | 2016-08-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 40V, Positive-QTOF | splash10-03dl-9123000000-71493bbb4b5c38c17db2 | 2016-08-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 10V, Negative-QTOF | splash10-053r-3002900000-194e702a216b0d2dfe90 | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 20V, Negative-QTOF | splash10-0a4i-9104400000-d8c800c6e0be22ba0c3b | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 40V, Negative-QTOF | splash10-0a4i-9001000000-d471d19421c5af96709a | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 10V, Positive-QTOF | splash10-00kb-0009500000-d2a48aae87364fb994dd | 2021-10-11 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 20V, Positive-QTOF | splash10-00xs-1129200000-ed0b6de04b391bc1df9d | 2021-10-11 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 40V, Positive-QTOF | splash10-052g-7900000000-8bffc330b362b9ac0f99 | 2021-10-11 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 10V, Negative-QTOF | splash10-001i-0001900000-1b7b5dcba43a1725ab4f | 2021-10-11 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 20V, Negative-QTOF | splash10-05ai-1019400000-26284711fd786b2aa592 | 2021-10-11 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Latanoprost 40V, Negative-QTOF | splash10-0a4l-9521000000-3fb318e74064f7c25805 | 2021-10-11 | Wishart Lab | View Spectrum |
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