| Record Information |
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| Version | 5.0 |
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| Status | Detected and Quantified |
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| Creation Date | 2006-03-09 14:33:53 UTC |
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| Update Date | 2023-02-21 17:15:57 UTC |
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| HMDB ID | HMDB0001900 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | Ribonolactone |
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| Description | Ribonolactone, also known as D-ribono-1,4-lactone is a five-membered form of ribonolactone having D-configuration. It has a role as a metabolite. It is a ribonolactone and a butan-4-olide. It derives from a D-ribonic acid. Ribonolactone belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. Ribonolactone is a metabolite normally not detectable in human biofluids; however, it has been found in the urine of patients with neuroblastoma. |
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| Structure | OC[C@H]1OC(=O)[C@H](O)[C@@H]1O InChI=1S/C5H8O5/c6-1-2-3(7)4(8)5(9)10-2/h2-4,6-8H,1H2/t2-,3-,4-/m1/s1 |
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| Synonyms | | Value | Source |
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| D-(+)-Ribonic acid gamma-lactone | ChEBI | | D-Ribonic acid-1,4-lactone | ChEBI | | D-Ribono-gamma-lactone | ChEBI | | D-Ribonolactone | ChEBI | | D-Ribopentono-1,4-lactone | ChEBI | | Ribono-gamma-lactone | ChEBI | | D-(+)-Ribonate g-lactone | Generator | | D-(+)-Ribonate gamma-lactone | Generator | | D-(+)-Ribonate γ-lactone | Generator | | D-(+)-Ribonic acid g-lactone | Generator | | D-(+)-Ribonic acid γ-lactone | Generator | | D-Ribonate-1,4-lactone | Generator | | D-Ribono-g-lactone | Generator | | D-Ribono-γ-lactone | Generator | | Ribono-g-lactone | Generator | | Ribono-γ-lactone | Generator | | D(+)-Ribonic acid gamma-lactone | HMDB | | D-(+)-Ribonone-1.4-lactone | HMDB | | D-ribono-1,4-Lactone | HMDB | | delta-(+)-Ribonic acid g-lactone | HMDB | | delta-(+)-Ribonic acid gamma-lactone | HMDB | | delta-(+)-Ribonone-1.4-lactone | HMDB | | delta-ribono-1,4-Lactone | HMDB | | delta-ribono-gamma-Lactone | HMDB | | delta-Ribonolactone | HMDB | | delta-ribopentono-1,4-Lactone | HMDB | | Deoxyribonolactone | HMDB | | gamma-Lactone OF ribonate | HMDB | | gamma-Lactone OF ribonic acid | HMDB | | gamma-Lactone-ribonate | HMDB | | gamma-Lactone-ribonic acid | HMDB | | Ribonolactone | ChEBI |
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| Chemical Formula | C5H8O5 |
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| Average Molecular Weight | 148.114 |
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| Monoisotopic Molecular Weight | 148.037173366 |
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| IUPAC Name | (3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-one |
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| Traditional Name | D-ribosone |
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| CAS Registry Number | 5336-08-3 |
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| SMILES | OC[C@H]1OC(=O)[C@H](O)[C@@H]1O |
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| InChI Identifier | InChI=1S/C5H8O5/c6-1-2-3(7)4(8)5(9)10-2/h2-4,6-8H,1H2/t2-,3-,4-/m1/s1 |
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| InChI Key | CUOKHACJLGPRHD-BXXZVTAOSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. |
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| Kingdom | Organic compounds |
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| Super Class | Organic oxygen compounds |
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| Class | Organooxygen compounds |
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| Sub Class | Carbohydrates and carbohydrate conjugates |
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| Direct Parent | Pentoses |
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| Alternative Parents | |
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| Substituents | - Pentose monosaccharide
- Gamma butyrolactone
- Tetrahydrofuran
- Carboxylic acid ester
- Lactone
- Secondary alcohol
- Monocarboxylic acid or derivatives
- Carboxylic acid derivative
- Oxacycle
- Organoheterocyclic compound
- Primary alcohol
- Hydrocarbon derivative
- Organic oxide
- Alcohol
- Carbonyl group
- Aliphatic heteromonocyclic compound
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| Molecular Framework | Aliphatic heteromonocyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Not Available | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | 83 - 85 °C | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | 1000000 mg/L @ 25 °C (est) | The Good Scents Company Information System | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 1.22 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 10.1667 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 3.2 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 214.4 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 802.4 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 359.0 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 42.7 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 210.4 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 82.4 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 284.7 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 266.1 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 673.5 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 634.4 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 54.7 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 904.3 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 220.3 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 268.0 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 721.5 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 284.4 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 355.1 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| Ribonolactone,1TMS,isomer #1 | C[Si](C)(C)OC[C@H]1OC(=O)[C@H](O)[C@@H]1O | 1458.3 | Semi standard non polar | 33892256 | | Ribonolactone,1TMS,isomer #2 | C[Si](C)(C)O[C@H]1C(=O)O[C@H](CO)[C@H]1O | 1502.3 | Semi standard non polar | 33892256 | | Ribonolactone,1TMS,isomer #3 | C[Si](C)(C)O[C@@H]1[C@@H](CO)OC(=O)[C@@H]1O | 1492.5 | Semi standard non polar | 33892256 | | Ribonolactone,2TMS,isomer #1 | C[Si](C)(C)OC[C@H]1OC(=O)[C@H](O[Si](C)(C)C)[C@@H]1O | 1606.1 | Semi standard non polar | 33892256 | | Ribonolactone,2TMS,isomer #2 | C[Si](C)(C)OC[C@H]1OC(=O)[C@H](O)[C@@H]1O[Si](C)(C)C | 1582.3 | Semi standard non polar | 33892256 | | Ribonolactone,2TMS,isomer #3 | C[Si](C)(C)O[C@H]1C(=O)O[C@H](CO)[C@H]1O[Si](C)(C)C | 1600.7 | Semi standard non polar | 33892256 | | Ribonolactone,3TMS,isomer #1 | C[Si](C)(C)OC[C@H]1OC(=O)[C@H](O[Si](C)(C)C)[C@@H]1O[Si](C)(C)C | 1695.8 | Semi standard non polar | 33892256 | | Ribonolactone,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@H]1OC(=O)[C@H](O)[C@@H]1O | 1703.8 | Semi standard non polar | 33892256 | | Ribonolactone,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)O[C@H]1C(=O)O[C@H](CO)[C@H]1O | 1742.8 | Semi standard non polar | 33892256 | | Ribonolactone,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)O[C@@H]1[C@@H](CO)OC(=O)[C@@H]1O | 1743.5 | Semi standard non polar | 33892256 | | Ribonolactone,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@H]1OC(=O)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O | 2052.0 | Semi standard non polar | 33892256 | | Ribonolactone,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC[C@H]1OC(=O)[C@H](O)[C@@H]1O[Si](C)(C)C(C)(C)C | 2047.0 | Semi standard non polar | 33892256 | | Ribonolactone,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)O[C@H]1C(=O)O[C@H](CO)[C@H]1O[Si](C)(C)C(C)(C)C | 2054.7 | Semi standard non polar | 33892256 | | Ribonolactone,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC[C@H]1OC(=O)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H]1O[Si](C)(C)C(C)(C)C | 2348.6 | Semi standard non polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Experimental GC-MS | GC-MS Spectrum - Ribonolactone GC-MS (3 TMS) | splash10-0gb9-1940000000-94abb554de5192928a9d | 2014-06-16 | HMDB team, MONA, MassBank | View Spectrum | | Experimental GC-MS | GC-MS Spectrum - Ribonolactone GC-MS (Non-derivatized) | splash10-0gb9-1940000000-94abb554de5192928a9d | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | | Experimental GC-MS | GC-MS Spectrum - Ribonolactone GC-EI-TOF (Non-derivatized) | splash10-0gba-0930000000-4632c741ce0480cf1b5a | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Ribonolactone GC-MS (Non-derivatized) - 70eV, Positive | splash10-00dl-9100000000-a5e444f62624dbfcd6fa | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Ribonolactone GC-MS (3 TMS) - 70eV, Positive | splash10-0fmr-8495000000-9bc99dc8dea71b2b2868 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Ribonolactone GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Ribonolactone GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Experimental LC-MS/MS | LC-MS/MS Spectrum - Ribonolactone Quattro_QQQ 10V, Positive-QTOF (Annotated) | splash10-001i-0900000000-c1cfbb14a5897b9ed6f8 | 2012-07-24 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Ribonolactone Quattro_QQQ 25V, Positive-QTOF (Annotated) | splash10-0udi-2900000000-d5f9f85cfe0854052394 | 2012-07-24 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - Ribonolactone Quattro_QQQ 40V, Positive-QTOF (Annotated) | splash10-004i-9100000000-d89f133906bd80602502 | 2012-07-24 | HMDB team, MONA | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 10V, Positive-QTOF | splash10-000t-1900000000-b64ac3389c7d8b379f19 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 20V, Positive-QTOF | splash10-001j-1900000000-c09704319f6945661841 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 40V, Positive-QTOF | splash10-0007-9000000000-446348aa4d5976158197 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 10V, Negative-QTOF | splash10-0002-1900000000-791200554bb4c8c773e6 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 20V, Negative-QTOF | splash10-002b-1900000000-6ba9f7411098c2510897 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 40V, Negative-QTOF | splash10-052f-9000000000-60c2f7da80588ed50ba2 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 10V, Negative-QTOF | splash10-054k-8900000000-c714107d5f4ef369bf5f | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 20V, Negative-QTOF | splash10-0a4i-9200000000-bc8dd374ff0254696d9c | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 40V, Negative-QTOF | splash10-0006-9000000000-9a547cc1ba49997144c8 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 10V, Positive-QTOF | splash10-001i-2900000000-e907f82a388dab97e8a6 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 20V, Positive-QTOF | splash10-0mc3-9400000000-a5c59004054eb153ecbc | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Ribonolactone 40V, Positive-QTOF | splash10-052f-9000000000-599e9990982d7f00bd09 | 2021-09-24 | Wishart Lab | View Spectrum |
NMR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Experimental 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, experimental) | 2012-12-04 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-16 | Wishart Lab | View Spectrum | | Experimental 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, H2O, experimental) | 2012-12-05 | Wishart Lab | View Spectrum |
IR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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