Hmdb loader

Showing metabocard for 3-Pyridylacetic acid (HMDB0001538)

Jump To Section:
IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesXML
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2005-11-16 15:48:42 UTC
Update Date2023-02-21 17:15:46 UTC
HMDB IDHMDB0001538
Secondary Accession Numbers
  • HMDB01538
Metabolite Identification
Common Name3-Pyridylacetic acid
Description3-Pyridylacetic acid is a breakdown product of nicotine (and other tobacco alkaloids) and is part of the nicotine degradation pathway. It is formed from 4-(3-pyridyl)-butanoate. One alkaloid in particular, myosmine, appears to be a major source for 3-pyridylacetic acid. The alkaloid myosmine is present not only in tobacco products but also in various foods. Myosmine is easily nitrosated, yielding 4-hydroxy-1-(3-pyridyl)-1-butanone (HPB) and the esophageal tobacco carcinogen N'-nitrosonornicotine. The two major metabolites of myosmine metabolism have been identified as 3-pyridylacetic acid (20-26%) and 4-oxo-4-(3-pyridyl)butyric acid (50-60%) (PMID:16079272 ). 3-pyridylacetatic acid is an analog of nicotinic acid. (PMID 13898750 ).
Structure
Data?1676999746
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0001538 (3-Pyridylacetic acid)


  Mrv1652305261923582D          

 10 10  0  0  0  0            999 V2000
   11.5275   -5.8963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5275   -6.7250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.2462   -5.4910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.8342   -5.4812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1133   -5.8823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4055   -5.4584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1002   -6.7072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6846   -5.8596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3793   -7.1083    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.6715   -6.6845    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  5  2  0  0  0  0
  8  6  2  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 10  9  2  0  0  0  0
  4  5  1  0  0  0  0
M  END
Download

3D MOL for HMDB0001538 (3-Pyridylacetic acid)

HMDB0001538
     RDKit          3D
3-Pyridylacetic acid
 17 17  0  0  0  0  0  0  0  0999 V2000
   -1.8230    1.4794   -0.1379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2442    0.2945   -0.1227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5705   -0.0236   -0.2781 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2495   -0.8058    0.0734 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1215   -0.2736    0.2220 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9236   -0.0934   -0.8950 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2042    0.4042   -0.7528 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7016    0.7281    0.5014 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8942    0.5383    1.5485 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6482    0.0593    1.4566 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8443   -0.6421   -1.0252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3295   -1.4284   -0.8620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5150   -1.4602    0.9054 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5284   -0.3497   -1.8820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8466    0.5498   -1.6356 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7088    1.1156    0.5775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0010   -0.0924    2.3067 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10  5  1  0
  3 11  1  0
  4 12  1  0
  4 13  1  0
  6 14  1  0
  7 15  1  0
  8 16  1  0
 10 17  1  0
M  END
Download

3D SDF for HMDB0001538 (3-Pyridylacetic acid)


  Mrv1652305261923582D          

 10 10  0  0  0  0            999 V2000
   11.5275   -5.8963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5275   -6.7250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.2462   -5.4910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.8342   -5.4812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1133   -5.8823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4055   -5.4584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1002   -6.7072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6846   -5.8596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3793   -7.1083    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.6715   -6.6845    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  5  2  0  0  0  0
  8  6  2  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 10  9  2  0  0  0  0
  4  5  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0001538

> <DATABASE_NAME>
hmdb

> <SMILES>
OC(=O)CC1=CN=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C7H7NO2/c9-7(10)4-6-2-1-3-8-5-6/h1-3,5H,4H2,(H,9,10)

> <INCHI_KEY>
WGNUNYPERJMVRM-UHFFFAOYSA-N

> <FORMULA>
C7H7NO2

> <MOLECULAR_WEIGHT>
137.136

> <EXACT_MASS>
137.047678473

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
17

> <JCHEM_AVERAGE_POLARIZABILITY>
13.18475033573732

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(pyridin-3-yl)acetic acid

> <ALOGPS_LOGP>
0.43

> <JCHEM_LOGP>
-0.5933040532539456

> <ALOGPS_LOGS>
-0.37

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.613664076629797

> <JCHEM_PKA_STRONGEST_BASIC>
4.973937384361667

> <JCHEM_POLAR_SURFACE_AREA>
50.19

> <JCHEM_REFRACTIVITY>
35.2087

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.83e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-pyridylacetic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0001538 (3-Pyridylacetic acid)

HMDB0001538
     RDKit          3D
3-Pyridylacetic acid
 17 17  0  0  0  0  0  0  0  0999 V2000
   -1.8230    1.4794   -0.1379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2442    0.2945   -0.1227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5705   -0.0236   -0.2781 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2495   -0.8058    0.0734 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1215   -0.2736    0.2220 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9236   -0.0934   -0.8950 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2042    0.4042   -0.7528 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7016    0.7281    0.5014 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8942    0.5383    1.5485 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6482    0.0593    1.4566 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8443   -0.6421   -1.0252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3295   -1.4284   -0.8620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5150   -1.4602    0.9054 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5284   -0.3497   -1.8820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8466    0.5498   -1.6356 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7088    1.1156    0.5775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0010   -0.0924    2.3067 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10  5  1  0
  3 11  1  0
  4 12  1  0
  4 13  1  0
  6 14  1  0
  7 15  1  0
  8 16  1  0
 10 17  1  0
M  END
Download

PDB for HMDB0001538 (3-Pyridylacetic acid)

HEADER    PROTEIN                                 26-MAY-19   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-19         0                                  
HETATM    1  C   UNK     0      21.518 -11.006   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      21.518 -12.553   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      22.860 -10.250   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      20.224 -10.232   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      18.878 -10.980   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      17.557 -10.189   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      18.854 -12.520   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      16.211 -10.938   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      17.508 -13.269   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      16.187 -12.478   0.000  0.00  0.00           C+0
CONECT    1    2    3    4                                                  
CONECT    2    1                                                            
CONECT    3    1                                                            
CONECT    4    1    5                                                       
CONECT    5    6    7    4                                                  
CONECT    6    5    8                                                       
CONECT    7    5    9                                                       
CONECT    8    6   10                                                       
CONECT    9    7   10                                                       
CONECT   10    8    9                                                       
MASTER        0    0    0    0    0    0    0    0   10    0   20    0
END
Download

3D PDB for HMDB0001538 (3-Pyridylacetic acid)

COMPND    HMDB0001538
HETATM    1  O1  UNL     1      -1.823   1.479  -0.138  1.00  0.00           O  
HETATM    2  C1  UNL     1      -2.244   0.294  -0.123  1.00  0.00           C  
HETATM    3  O2  UNL     1      -3.571  -0.024  -0.278  1.00  0.00           O  
HETATM    4  C2  UNL     1      -1.249  -0.806   0.073  1.00  0.00           C  
HETATM    5  C3  UNL     1       0.121  -0.274   0.222  1.00  0.00           C  
HETATM    6  C4  UNL     1       0.924  -0.093  -0.895  1.00  0.00           C  
HETATM    7  C5  UNL     1       2.204   0.404  -0.753  1.00  0.00           C  
HETATM    8  C6  UNL     1       2.702   0.728   0.501  1.00  0.00           C  
HETATM    9  N1  UNL     1       1.894   0.538   1.549  1.00  0.00           N  
HETATM   10  C7  UNL     1       0.648   0.059   1.457  1.00  0.00           C  
HETATM   11  H1  UNL     1      -3.844  -0.642  -1.025  1.00  0.00           H  
HETATM   12  H2  UNL     1      -1.330  -1.428  -0.862  1.00  0.00           H  
HETATM   13  H3  UNL     1      -1.515  -1.460   0.905  1.00  0.00           H  
HETATM   14  H4  UNL     1       0.528  -0.350  -1.882  1.00  0.00           H  
HETATM   15  H5  UNL     1       2.847   0.550  -1.636  1.00  0.00           H  
HETATM   16  H6  UNL     1       3.709   1.116   0.577  1.00  0.00           H  
HETATM   17  H7  UNL     1      -0.001  -0.092   2.307  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3    4
CONECT    3   11
CONECT    4    5   12   13
CONECT    5    6    6   10
CONECT    6    7   14
CONECT    7    8    8   15
CONECT    8    9   16
CONECT    9   10   10
CONECT   10   17
END
Download

SMILES for HMDB0001538 (3-Pyridylacetic acid)

OC(=O)CC1=CN=CC=C1
Download

INCHI for HMDB0001538 (3-Pyridylacetic acid)

InChI=1S/C7H7NO2/c9-7(10)4-6-2-1-3-8-5-6/h1-3,5H,4H2,(H,9,10)
Download
View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
3-PyridylacetateGenerator
2-(3-Pyridyl)acetateHMDB
2-(3-Pyridyl)acetic acidHMDB
2-(Pyridin-3-yl)acetateHMDB
2-(Pyridin-3-yl)acetic acidHMDB
3-CarboxymethylpyridineHMDB
a-(3-Pyridyl)acetateHMDB
a-(3-Pyridyl)acetic acidHMDB
alpha-(3-Pyridyl)acetateHMDB
alpha-(3-Pyridyl)acetic acidHMDB
ColetinHMDB
LessterolHMDB
LioxoneHMDB
MinedilHMDB
PiridilHMDB
PiristerolHMDB
Pyridin-3-ylacetateHMDB
Pyridin-3-ylacetic acidHMDB
ToneonHMDB
2-(3-Pyridine)acetic acidMeSH, HMDB
3-Pyridineacetic acidMeSH, HMDB
Chemical FormulaC7H7NO2
Average Molecular Weight137.136
Monoisotopic Molecular Weight137.047678473
IUPAC Name2-(pyridin-3-yl)acetic acid
Traditional Name3-pyridylacetic acid
CAS Registry Number501-81-5
SMILES
OC(=O)CC1=CN=CC=C1
InChI Identifier
InChI=1S/C7H7NO2/c9-7(10)4-6-2-1-3-8-5-6/h1-3,5H,4H2,(H,9,10)
InChI KeyWGNUNYPERJMVRM-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyridines and derivatives. Pyridines and derivatives are compounds containing a pyridine ring, which is a six-member aromatic heterocycle which consists of one nitrogen atom and five carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyridines and derivatives
Sub ClassNot Available
Direct ParentPyridines and derivatives
Alternative Parents
Substituents
  • Pyridine
  • Heteroaromatic compound
  • Azacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility58.3 g/LALOGPS
logP0.43ALOGPS
logP-0.59ChemAxon
logS-0.37ALOGPS
pKa (Strongest Acidic)3.61ChemAxon
pKa (Strongest Basic)4.97ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area50.19 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity35.21 m³·mol⁻¹ChemAxon
Polarizability13.18 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+128.62631661259
DarkChem[M-H]-123.56431661259
AllCCS[M+H]+128.48132859911
AllCCS[M-H]-126.14332859911
DeepCCS[M+H]+128.28230932474
DeepCCS[M-H]-125.08530932474
DeepCCS[M-2H]-162.02430932474
DeepCCS[M+Na]+137.39430932474
AllCCS[M+H]+128.532859911
AllCCS[M+H-H2O]+123.832859911
AllCCS[M+NH4]+132.932859911
AllCCS[M+Na]+134.132859911
AllCCS[M-H]-126.132859911
AllCCS[M+Na-2H]-127.832859911
AllCCS[M+HCOO]-129.632859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.2.38 minutes32390414
Predicted by Siyang on May 30, 20228.602 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.66 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid185.8 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid495.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid302.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid72.7 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid180.5 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid47.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid263.2 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid225.6 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)218.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid566.8 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid38.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid716.6 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid188.3 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid241.0 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate542.3 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA344.8 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water298.4 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3-Pyridylacetic acidOC(=O)CC1=CN=CC=C12249.3Standard polar33892256
3-Pyridylacetic acidOC(=O)CC1=CN=CC=C11278.6Standard non polar33892256
3-Pyridylacetic acidOC(=O)CC1=CN=CC=C11355.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
3-Pyridylacetic acid,1TMS,isomer #1C[Si](C)(C)OC(=O)CC1=CC=CN=C11399.4Semi standard non polar33892256
3-Pyridylacetic acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC1=CC=CN=C11627.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - 3-Pyridylacetic acid GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (Non-derivatized)splash10-00kf-2900000000-aac5c5306dec497de5852014-06-16HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 3-Pyridylacetic acid EI-B (Non-derivatized)splash10-014l-1900000000-c98d84fdf977d74c24742017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 3-Pyridylacetic acid GC-EI-TOF (Non-derivatized)splash10-00kf-2900000000-aac5c5306dec497de5852017-09-12HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-Pyridylacetic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9300000000-77c774fbbba55426ddba2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-Pyridylacetic acid GC-MS (1 TMS) - 70eV, Positivesplash10-006x-9200000000-805e406695a85dfb497d2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-Pyridylacetic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - 3-Pyridylacetic acid Quattro_QQQ 10V, Positive-QTOF (Annotated)splash10-000i-0900000000-964146db5c3fedc485a52012-07-24HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 3-Pyridylacetic acid Quattro_QQQ 25V, Positive-QTOF (Annotated)splash10-0006-9100000000-8f77c7e2475dc6ac6bfe2012-07-24HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 3-Pyridylacetic acid Quattro_QQQ 40V, Positive-QTOF (Annotated)splash10-00kf-9000000000-c7a59cf72ca01533f8642012-07-24HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 3-Pyridylacetic acid 10V, Negative-QTOFsplash10-0006-9000000000-8965511bd8c86b56eabb2021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 10V, Positive-QTOFsplash10-00di-1900000000-10149149c6d319e7f9802017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 20V, Positive-QTOFsplash10-006x-9700000000-f1b2745c5221401a430c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 40V, Positive-QTOFsplash10-0006-9100000000-32a62918974897c3306f2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 10V, Negative-QTOFsplash10-000l-4900000000-4f856c8dbfb884e629612017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 20V, Negative-QTOFsplash10-00ko-5900000000-ed528dcebf9acf8cca602017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 40V, Negative-QTOFsplash10-014l-7900000000-9101833fcccbfe2041c92017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 10V, Negative-QTOFsplash10-000f-9400000000-0f854f0a78bbf05c4a1c2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 20V, Negative-QTOFsplash10-0006-9000000000-eef4c1f804c025cbb9782021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 40V, Negative-QTOFsplash10-0006-9000000000-f438bd86719d488e2cdd2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 10V, Positive-QTOFsplash10-00dr-1900000000-6d1d500f4fb64a3183c72021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 20V, Positive-QTOFsplash10-0006-9100000000-928b34bd2cad6c907ef42021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Pyridylacetic acid 40V, Positive-QTOFsplash10-00kf-9000000000-080cf76239008755a2702021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Experimental 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, experimental)2021-10-10Wishart LabView Spectrum
Experimental 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, experimental)2021-10-10Wishart LabView Spectrum
Experimental 2D NMR[1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, H2O, experimental)2012-12-05Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified2.47 +/- 1.55 uMAdult (>18 years old)BothNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB022679
KNApSAcK IDNot Available
Chemspider ID106
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN ID6308
PubChem Compound108
PDB IDNot Available
ChEBI ID86390
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis Referenceaquet, Andre; Marison, Ian W.; Meyer, Hans Peter; Von Stockar, Urs. Choice of a method for in situ recovery of 3-pyridylacetic acid formed by biotransformation with Pseudomonas oleovorans. Chimia (1996), 50(9), 426-427.
Material Safety Data Sheet (MSDS)Download (PDF)
General References
  1. Zwickenpflug W, Tyroller S, Richter E: Metabolism of myosmine in Wistar rats. Drug Metab Dispos. 2005 Nov;33(11):1648-56. Epub 2005 Aug 3. [PubMed:16079272 ]
  2. GINOULHIAC E, TENCONI LT, CHIANCONE FM: 3-Pyridineacetic acid and nicotinic acid: blood levels, urinary elimination and excretion of nicotinic acid derivatives in man. Nature. 1962 Mar 10;193:948-9. [PubMed:13898750 ]