| Record Information |
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| Version | 5.0 |
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| Status | Detected and Quantified |
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| Creation Date | 2005-11-16 15:48:42 UTC |
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| Update Date | 2023-02-21 17:15:38 UTC |
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| HMDB ID | HMDB0001368 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | 3-Mercaptopyruvic acid |
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| Description | 3-Mercaptopyruvic acid, also known as 3-mercapto-2-oxopropanoate or beta-thiopyruvate, belongs to the class of organic compounds known as alpha-keto acids and derivatives. These are organic compounds containing an aldehyde substituted with a keto group on the adjacent carbon. 3-Mercaptopyruvic acid is an intermediate in cysteine metabolism. 3-Mercaptopyruvic acid exists in all living organisms, ranging from bacteria to humans. Within humans, 3-mercaptopyruvic acid participates in a number of enzymatic reactions. In particular, 3-mercaptopyruvic acid and cyanide can be converted into pyruvic acid and thiocyanate; which is mediated by the enzyme 3-mercaptopyruvate sulfurtransferase. In addition, 3-mercaptopyruvic acid can be biosynthesized from 3-mercaptolactic acid; which is mediated by the enzyme L-lactate dehydrogenase. It has been studied as a potential treatment for cyanide poisoning, but its half-life is too short for it to be clinically effective. In humans, 3-mercaptopyruvic acid is involved in cystinosis, ocular nonnephropathic. Outside of the human body, 3-mercaptopyruvic acid has been detected, but not quantified in several different foods, such as lima beans, spinachs, shallots, mexican groundcherries, and white lupines. This could make 3-mercaptopyruvic acid a potential biomarker for the consumption of these foods. |
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| Structure | InChI=1S/C3H4O3S/c4-2(1-7)3(5)6/h7H,1H2,(H,5,6) |
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| Synonyms | | Value | Source |
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| 3-Mercapto-2-oxopropanoic acid | ChEBI | | 3-Mercaptopyruvate | ChEBI | | Mercaptopyruvate | ChEBI | | 3-Mercapto-2-oxopropanoate | Generator | | Mercaptopyruvic acid | Generator | | 3-Mercapto-pyruvate | HMDB | | 3-Mercapto-pyruvic acid | HMDB | | beta-3-Mercapto-2-oxo-propanoate | HMDB | | beta-3-Mercapto-2-oxo-propanoic acid | HMDB | | beta-Mercaptopyruvate | HMDB | | beta-Mercaptopyruvic acid | HMDB | | beta-Thiopyruvate | HMDB | | beta-Thiopyruvic acid | HMDB | | Thiopyruvate | HMDB | | 3-Mercaptopyruvate monosodium salt | HMDB |
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| Chemical Formula | C3H4O3S |
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| Average Molecular Weight | 120.127 |
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| Monoisotopic Molecular Weight | 119.988114684 |
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| IUPAC Name | 2-oxo-3-sulfanylpropanoic acid |
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| Traditional Name | β-mercaptopyruvic acid |
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| CAS Registry Number | 2464-23-5 |
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| SMILES | OC(=O)C(=O)CS |
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| InChI Identifier | InChI=1S/C3H4O3S/c4-2(1-7)3(5)6/h7H,1H2,(H,5,6) |
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| InChI Key | OJOLFAIGOXZBCI-UHFFFAOYSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as alpha-keto acids and derivatives. These are organic compounds containing an aldehyde substituted with a keto group on the adjacent carbon. |
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| Kingdom | Organic compounds |
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| Super Class | Organic acids and derivatives |
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| Class | Keto acids and derivatives |
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| Sub Class | Alpha-keto acids and derivatives |
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| Direct Parent | Alpha-keto acids and derivatives |
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| Alternative Parents | |
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| Substituents | - Alpha-keto acid
- Alpha-hydroxy ketone
- Ketone
- Monocarboxylic acid or derivatives
- Carboxylic acid
- Carboxylic acid derivative
- Alkylthiol
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organosulfur compound
- Organooxygen compound
- Carbonyl group
- Aliphatic acyclic compound
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| Molecular Framework | Aliphatic acyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Not Available | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 2.15 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 11.3035 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 3.12 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 132.4 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 1502.5 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 431.0 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 127.2 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 303.4 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 103.6 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 359.1 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 483.5 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 661.9 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 796.5 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 149.8 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1077.7 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 299.9 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 313.3 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 763.1 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 330.6 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 275.8 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| 3-Mercaptopyruvic acid,1TMS,isomer #1 | C[Si](C)(C)OC(=O)C(=O)CS | 1154.9 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,1TMS,isomer #2 | C[Si](C)(C)SCC(=O)C(=O)O | 1329.6 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,1TMS,isomer #3 | C[Si](C)(C)OC(=CS)C(=O)O | 1304.1 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C(=O)CS[Si](C)(C)C | 1433.2 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C(=O)CS[Si](C)(C)C | 1379.7 | Standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C(=O)CS[Si](C)(C)C | 1509.4 | Standard polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #2 | C[Si](C)(C)OC(=O)C(=CS)O[Si](C)(C)C | 1467.7 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #2 | C[Si](C)(C)OC(=O)C(=CS)O[Si](C)(C)C | 1462.3 | Standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #2 | C[Si](C)(C)OC(=O)C(=CS)O[Si](C)(C)C | 1478.6 | Standard polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #3 | C[Si](C)(C)OC(=CS[Si](C)(C)C)C(=O)O | 1530.1 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #3 | C[Si](C)(C)OC(=CS[Si](C)(C)C)C(=O)O | 1527.9 | Standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TMS,isomer #3 | C[Si](C)(C)OC(=CS[Si](C)(C)C)C(=O)O | 1696.9 | Standard polar | 33892256 | | 3-Mercaptopyruvic acid,3TMS,isomer #1 | C[Si](C)(C)OC(=O)C(=CS[Si](C)(C)C)O[Si](C)(C)C | 1565.2 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,3TMS,isomer #1 | C[Si](C)(C)OC(=O)C(=CS[Si](C)(C)C)O[Si](C)(C)C | 1471.0 | Standard non polar | 33892256 | | 3-Mercaptopyruvic acid,3TMS,isomer #1 | C[Si](C)(C)OC(=O)C(=CS[Si](C)(C)C)O[Si](C)(C)C | 1516.9 | Standard polar | 33892256 | | 3-Mercaptopyruvic acid,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C(=O)CS | 1417.6 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)SCC(=O)C(=O)O | 1585.6 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=CS)C(=O)O | 1542.2 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C(=O)CS[Si](C)(C)C(C)(C)C | 1883.1 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C(=O)CS[Si](C)(C)C(C)(C)C | 1825.3 | Standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C(=O)CS[Si](C)(C)C(C)(C)C | 1793.1 | Standard polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C(=CS)O[Si](C)(C)C(C)(C)C | 1883.6 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C(=CS)O[Si](C)(C)C(C)(C)C | 1890.7 | Standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C(=CS)O[Si](C)(C)C(C)(C)C | 1756.8 | Standard polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=CS[Si](C)(C)C(C)(C)C)C(=O)O | 1961.7 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=CS[Si](C)(C)C(C)(C)C)C(=O)O | 1949.3 | Standard non polar | 33892256 | | 3-Mercaptopyruvic acid,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=CS[Si](C)(C)C(C)(C)C)C(=O)O | 1904.8 | Standard polar | 33892256 | | 3-Mercaptopyruvic acid,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C(=CS[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 2188.3 | Semi standard non polar | 33892256 | | 3-Mercaptopyruvic acid,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C(=CS[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 2057.9 | Standard non polar | 33892256 | | 3-Mercaptopyruvic acid,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C(=CS[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 1929.4 | Standard polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - 3-Mercaptopyruvic acid GC-MS (Non-derivatized) - 70eV, Positive | splash10-00di-9000000000-b81f8808977132c3a8ac | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Mercaptopyruvic acid GC-MS (1 TMS) - 70eV, Positive | splash10-00di-9300000000-5100fd5cbb3bf9df1e75 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Mercaptopyruvic acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Mercaptopyruvic acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Mercaptopyruvic acid Quattro_QQQ 10V, Negative-QTOF (Annotated) | splash10-003r-9200000000-f1e0c53958ad51dc0068 | 2012-07-24 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Mercaptopyruvic acid Quattro_QQQ 25V, Negative-QTOF (Annotated) | splash10-001j-9000000000-60f6deb41f42078dd60c | 2012-07-24 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Mercaptopyruvic acid Quattro_QQQ 40V, Negative-QTOF (Annotated) | splash10-001i-9000000000-5dc69d3b59bd15290aef | 2012-07-24 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 40V, Negative-QTOF | splash10-02t9-9000000000-e1511333b005fa911312 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 20V, Negative-QTOF | splash10-00kf-9000000000-65854057c742d34c8dbb | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 10V, Negative-QTOF | splash10-006w-9000000000-66939f30bca1061b4b83 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 10V, Positive-QTOF | splash10-0fk9-2900000000-0da521157f8235fe7758 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 20V, Positive-QTOF | splash10-0fk9-7900000000-8c127be0565b54938cd2 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 40V, Positive-QTOF | splash10-0ab9-9000000000-d4a8d07d451ba309b2e2 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 10V, Negative-QTOF | splash10-014i-1900000000-849e74ceb9308736ba6d | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 20V, Negative-QTOF | splash10-0gb9-2900000000-5a713232367a68a966a0 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 40V, Negative-QTOF | splash10-0fk9-9300000000-564344466a63b943c6da | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 10V, Negative-QTOF | splash10-006x-9200000000-95772f7f626a811df489 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 20V, Negative-QTOF | splash10-001i-9000000000-32551e3b5faf0b1e7000 | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 40V, Negative-QTOF | splash10-001i-9000000000-572c315b879edca344fa | 2021-09-23 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 10V, Positive-QTOF | splash10-00di-9400000000-8738d67598547a4b3429 | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 20V, Positive-QTOF | splash10-00di-9000000000-4ba1ab7a6a1dc95bba23 | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Mercaptopyruvic acid 40V, Positive-QTOF | splash10-0002-9000000000-6a9a04efc4b7bb2af1eb | 2021-09-25 | Wishart Lab | View Spectrum |
NMR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Experimental 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, experimental) | 2012-12-04 | Wishart Lab | View Spectrum | | Experimental 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, H2O, experimental) | 2012-12-05 | Wishart Lab | View Spectrum |
IR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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